Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28740 207 / 8e-67 unknown protein AT1G02910 65 / 1e-12 LPA1 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011914 [exp] 294 / 1e-100 AT4G28740 374 / 5e-129 unknown protein Lus10036345 [exp] 67 / 2e-13 AT1G02910 620 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10010280 [exp] 63 / 5e-12 AT1G02910 610 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194500 [exp] 239 / 8e-80 AT4G28740 301 / 5e-101 unknown protein Potri.002G206300 [exp] 69 / 4e-14 AT1G02910 615 / 0.0 LOW PSII ACCUMULATION1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022845 pacid=23159997 polypeptide=Lus10022845 locus=Lus10022845.g ID=Lus10022845.BGIv1.0 annot-version=v1.0 ATGAGCTCGTTGCGAGGGTACGCTAGGATCGTGATATGTGCTGGACCTGGTGAGTTCATCCTGGATGCGTTTAGGAAGAGTGAGCCTTTCACTGAAGGGC TGGTGGAAAGAGGGGTGCTCGTTGTGCCGTTTGCTACTGATGGGGAGAGTTTGCCTGGGTTTGAGTTCGATGAGAGTGAGGAGATGAAGGATTTTACGTC GAAGAGGAAGAGGTTGTGGCAGCTGACTCCACTCTTTGCTAATGAATGGTCCAAGTGGTTAGATGATCAGAAGAAACTTGCTGGCGTCTCTGATGAATCT CCTGTGTATGGCTTCTCGATCTTTGTGTCAAATCGGCAAGAGTACTTATCGTTGAGGTTAGATGGAAGGGTCCGGGGGAGTGGAGTTGGCTACCCGCCAT GGAATGCTTTCGTTGCGCAATTGCCGCCGGTGAAAGGAATCTGGAGTGGTCTTCTTGATGGAATGGATGGTAGAGTTCTGTAG
AA sequence Show only first row Show all	>Lus10022845 pacid=23159997 polypeptide=Lus10022845 locus=Lus10022845.g ID=Lus10022845.BGIv1.0 annot-version=v1.0 MSSLRGYARIVICAGPGEFILDAFRKSEPFTEGLVERGVLVVPFATDGESLPGFEFDESEEMKDFTSKRKRLWQLTPLFANEWSKWLDDQKKLAGVSDES PVYGFSIFVSNRQEYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWSGLLDGMDGRVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28740			unknown protein		Lus10022845 [exp]	0	1
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10043342 [exp]	10.5	0.8779
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	18.5	0.8597
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10008696 [exp]	20.1	0.7894
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	23.9	0.8585
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	25.1	0.8580
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	28.5	0.8574
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10018223 [exp]	28.6	0.8171
AT5G42070			unknown protein		Lus10032408 [exp]	30.6	0.8465
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	31.0	0.8452
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Lus10011873 [exp]	37.1	0.8099

Compare expression of checked genes

Lus10022845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.