Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43920 551 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G08560 350 / 8e-115 transducin family protein / WD-40 repeat family protein (.1.2) AT3G49660 91 / 4e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 82 / 5e-17 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G27640 82 / 2e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 72 / 8e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 74 / 1e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 72 / 2e-13 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G52360 68 / 8e-12 Coatomer, beta' subunit (.1.2) AT3G45620 67 / 9e-12 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011916 [exp] 947 / 0 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001411 [exp] 369 / 6e-123 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001046 [exp] 370 / 2e-122 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 342 / 1e-111 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 338 / 3e-110 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10039636 [exp] 97 / 7e-22 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 94 / 4e-21 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 86 / 3e-18 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 84 / 1e-17 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194100 [exp] 629 / 0 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G055800 [exp] 365 / 1e-120 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G206600 [exp] 362 / 1e-119 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002700 [exp] 303 / 3e-97 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 274 / 3e-86 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.007G009500 [exp] 91 / 7e-20 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 89 / 2e-19 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 87 / 1e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 76 / 3e-15 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G345400 [exp] 68 / 5e-12 AT3G27640 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10022847 pacid=23159959 polypeptide=Lus10022847 locus=Lus10022847.g ID=Lus10022847.BGIv1.0 annot-version=v1.0 ATGGAGAACTTGTGTACAGCCATTGGTCCAAAGGGTTTAATAAGAAGGCATGAGCTCGTCACGCTGATAATCCAAAGCCTATACACATTGGGTTACAGAA AGTCGGCTTCTACGCTGGAATCAGAATCCTGTATTTGCAGGATATCTCCGCAGCTTGAGCTGCTGGAGTCCCAGATTCTTGTGGGGAATTGGGATGCCTC CATTGACATCATTAACTCGATTGAGGAGTTGGCGGATGAGGCACGATCTTCGGTCTTGTTTCTTCTGTGTAAACAGCATTTGTCCGAGTGTTTGAATTGC GGGAACCTTCCACTGGCTTTGCATGTTTTGCGGAATCTGGTTCCTGGGCTAATTGATAGCAGAGAGAGAGTTCGTACTCTTGCTTGTAGTGTGTTTTCTG TAAAAGAGATGGGTTTTAGTAACGAAGACGAGATCTTGGATCAGCGGAGAGGGTTATTGTTGGAGATGAAGAAACTGTTTCTTCCTCCAATTGTGTCGAG TGAGGGAAGATTACAACACTTGGTTGAAAAAGCTGTCACATCTCAAATTGATTCCTGTAAGTATCACAATACAGATGAGGGTGTTTCACTCTATGAGGAT CATTGTTGTAGCAGAGATCAGATACCCACAGGGACAGTTCAGGTGATGGAAGATGGGAAGTTGGGATTTAAACACATGTTAAACAGCCACCGAAAGCCGG TATCTTTAGTGGCTTGGAGCCCTGACGATACCAAGCTGCTAACATGTGGGAATGCAGAAGTCCTCAAGCTCTGGGACGTGGAAACAGGTACATGCTTGCG TACATTTGGAGATCCTGGCTTCATTGTAAGCTCATGTGCTTGGTTTCCCGACTCAAAGCGACTTGTCTGTGGCAGTTCGGATCCCGAAAAGGGCATCTTC ATGTGGGACTGTGACGGAAAAGAGTTATCGGCATGGAAGGGGAAAAGGATGCCGAAAGTTTCTGATCTCGCGGTGACACCCGATGGGGAACATATCATCG TTGTCTCCGATAAAGAAATCCGCAAGTTCAATGTGAAGACGTTTGCTGAGCAGTTGATAGTGGAGGCGCATTCGATTACCTCCCTTTCGGTTTCCGTTAA CGGGGAGGACGTTATCGTCAATCTCAACAGCGAGGAGATCCATCTGTGGGATGCCGGTTTCAAATGGGATAAGCCGGTAAGGTTCACTGGCCACAAGCAG AATAAGTACGTCATTCGTTCCTGCTTTGGTGGGTTGAATAGCTCTTTCATCGCAAGTGGCAGTGAGGATTCTCAGGTCTACATCTGGAATCGGAAGGCTC CAGACCCGATCGAGATCTTGCGAGGCCATCAGATGACAGTGAACTGCGTAAGCTGGAACCCGAAACGGCATAGAATGTTGGCATCTGCTAGCGACGATCG TACGATTCGGATATGGGAACCAAGTCAATCCACAGAAGAAGAAAAATAA
AA sequence Show only first row Show all	>Lus10022847 pacid=23159959 polypeptide=Lus10022847 locus=Lus10022847.g ID=Lus10022847.BGIv1.0 annot-version=v1.0 MENLCTAIGPKGLIRRHELVTLIIQSLYTLGYRKSASTLESESCICRISPQLELLESQILVGNWDASIDIINSIEELADEARSSVLFLLCKQHLSECLNC GNLPLALHVLRNLVPGLIDSRERVRTLACSVFSVKEMGFSNEDEILDQRRGLLLEMKKLFLPPIVSSEGRLQHLVEKAVTSQIDSCKYHNTDEGVSLYED HCCSRDQIPTGTVQVMEDGKLGFKHMLNSHRKPVSLVAWSPDDTKLLTCGNAEVLKLWDVETGTCLRTFGDPGFIVSSCAWFPDSKRLVCGSSDPEKGIF MWDCDGKELSAWKGKRMPKVSDLAVTPDGEHIIVVSDKEIRKFNVKTFAEQLIVEAHSITSLSVSVNGEDVIVNLNSEEIHLWDAGFKWDKPVRFTGHKQ NKYVIRSCFGGLNSSFIASGSEDSQVYIWNRKAPDPIEILRGHQMTVNCVSWNPKRHRMLASASDDRTIRIWEPSQSTEEEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	0	1
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	1.4	0.9344
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	3.5	0.8943
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	8.0	0.8867
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	8.6	0.9060
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10007311 [exp]	10.6	0.8744
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10001544 [exp]	11.0	0.8731
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	12.6	0.8711
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Lus10027876 [exp]	18.3	0.8607
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	18.3	0.8851
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10004551 [exp]	18.4	0.8858

Compare expression of checked genes

Lus10022847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.