Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20300 867 / 0 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT5G56890 578 / 0 Protein kinase superfamily protein (.1) AT4G02010 374 / 5e-119 Protein kinase superfamily protein (.1) AT3G20530 310 / 1e-98 Protein kinase superfamily protein (.1) AT1G68690 319 / 3e-98 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G13160 310 / 9e-98 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G24550 313 / 1e-96 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 309 / 1e-96 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G18610 309 / 1e-96 Protein kinase superfamily protein (.1.2) AT1G20650 304 / 2e-96 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011917 [exp] 1263 / 0 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10027635 [exp] 583 / 0 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011933 [exp] 568 / 0 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10037526 [exp] 355 / 4e-112 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011466 [exp] 370 / 4e-111 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015756 [exp] 326 / 8e-104 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 313 / 4e-98 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 313 / 5e-98 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10043050 [exp] 307 / 2e-97 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194300 [exp] 963 / 0 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 952 / 0 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 592 / 0 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 560 / 0 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 547 / 0 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 377 / 6e-120 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 376 / 9e-120 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 320 / 2e-101 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 320 / 2e-101 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 327 / 4e-101 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022848 pacid=23160001 polypeptide=Lus10022848 locus=Lus10022848.g ID=Lus10022848.BGIv1.0 annot-version=v1.0 ATGGATGAGTTATGTTCCCTTTATCGCTTTGCAGCAAGTTCTAATTCAGAGAGGGTGCCATTTGGCTGGTTGCAGCCTTCTCTAAGGCATCGGCTTAAAC CTCCTCCCCTAAGGCCATCTTTTGTACCTGCACCTGCCCCTGCTCCTTTCCCACTGCATAAGGCCTCCTCCAGTCCGAGAATTGCTCCCTTACAGAGGCG TCGTGGTCATCATCGTCATCACCATCCTAAACCAGCTGTAGTCCCTCCATCCCCTTCAGACAAGCCAAGATGTGATCAAACTTGTGTCGATCCACTCACG GCAACTCCATATGGTTCACCTTGTGGCTGTGTATTTCCTATGAAAGTCAGGCTGCTTTTGACTGCGGCTCCTTATACCATTTTTCCAGTCATGAATGAGC TAGAGGTTGAACTAGCAACAGGCACTTATTTAGAGCAGAGTCAAGTGACGATAATGGGTGCAACTGCTGATAGTCAAAATCAGGGAGAAACTGTCGTGGA TGTTAATTTGGTGCCGTTGGGAGATAAATTTGATAATACCACGGCTAGCCTTATTTATCAAAGATTCTGGCATAAGAAGGTGCACCATATGTTTCATCAG CTGTTGCCGCCTCTTGTGTCGTACTTGATTCTAGAGTTTGTATCAGGTATTCCTTCTTCACCACCATATCCAAGTGATTCAGCCACCAGTCCATCTGGAA ATGGCCGAGATCTGCCATTCACTGTAAATCCAGTGAAGAAGAGCAAGGGGATGAACTTTAGGACCTTACTAATCATTGCACTGTCATCTGTTGCATTCTT GTTGGTGTTAGTTGCGGCAATCTCCATTTTCATCAAATGGAAGAAGTATGGGAAACCCTCAAATGCTGTTGGTCCTACATTCCCATCATCTATCAATAAA AGATCAGGTTTGGGATCCTTTTTATCAGGTAGTATTGCAAGCTCAACATCAATGTCCCTGATGTCCAACATGGCTCCTTGCATGTTATCTGTCAAAACAT TTACATTTGTGGAGCTTGATAGGGCAACTGAGAAGTTCAGTTCAAAGAGGATCCTGGGTGTGGGAGGATTTGGGTGTGTTTACCATGGGATCATGGAGGA CAAGACCGAAGTTGCTGTTAAAGTGCTTACTAGGGACAATCAGAATGGAGACCGTGAGTTCATAGCAGAAGTAGAGATGTTGAGTCGGTTACATCATCGT AATCTTGTCAAACTGATTGGCATCTGCATCGAAGGGCGAACCCGCTGTTTGGTGTATGAACTTGTCCACAATGGCAGTGTTGAATCTCATTTACACGGTG TTGATAAGCGAAAAGGCTATCTCGACTGGGATGCGCGGTTGAAAATTGCTCTTGGATCCGCTAGAGGACTCGCCTATCTACATGAAGATTCAAACCCTCG CGTGATCCACCGAGATTTTAAAGGTAGTAACATTTTGCTGGAAGATGACTTCACCCCCAAGGTATCTGATTTTGGCTTGGCAAAGGAAGCTACTGAAGGA AGTCATCACATCTCTACTAGAGTCATGGGGACTTTCGGGTACGTAGCCCCTGAATATGCAATGACAGGTCACCTACTCGTGAAAAGCGATGTCTACAGCT ACGGTGTCGTACTACTCGAACTTCTCTCCGGCAGAAAACCAGTCGATATGTCCCAACCTCAGGGACAAGAAAACTTAGTAACATGGGCGCGTCCACTACT AACAACAAGAGAAGGACTGGAGCAGCTGGTGGATCCATCTTTAGCCAGAAGGTACAATTTCGACGACATGGCGAAAGTGGCAGCCATCGCCTCGATGTGT GTCCACCCGGAAGTTACCAACAGACCCTTCATGGGAGAAGTAGTGCAGGCTCTAAAACTGATATACAACGATACCGACGATACCGGTGCGGACAACTACA GCCAAAAGGAGGAGTCTTCCGCACTGGACTCTGATTTCAAAGGCGGCGATTTCGTAGCTTCGGACAGCAGCTGGTGGAATGCTGGTGCGATCTCGCCACA CTTGACCTACGGCCAGGCATCGCCTTTCATTACAATGGAGTACAGCTCAGGTCCGCTCGAAGACATGGAGAACAGACCGGTTTCCGTGTCGAGCTTTTCG TCTCCGGTCAGGCACGGGAACCGGTCCGGTCCGTTGAGAACAATCCGCAGTAAACCTTCGTTTTACAGATTCAGAGGGAGCATGAGCGATCATGGCGGGG ATCCTCGCCCCGCGAGACGTTCTGCAAATGATGGATATTGGGTTTGA
AA sequence Show only first row Show all	>Lus10022848 pacid=23160001 polypeptide=Lus10022848 locus=Lus10022848.g ID=Lus10022848.BGIv1.0 annot-version=v1.0 MDELCSLYRFAASSNSERVPFGWLQPSLRHRLKPPPLRPSFVPAPAPAPFPLHKASSSPRIAPLQRRRGHHRHHHPKPAVVPPSPSDKPRCDQTCVDPLT ATPYGSPCGCVFPMKVRLLLTAAPYTIFPVMNELEVELATGTYLEQSQVTIMGATADSQNQGETVVDVNLVPLGDKFDNTTASLIYQRFWHKKVHHMFHQ LLPPLVSYLILEFVSGIPSSPPYPSDSATSPSGNGRDLPFTVNPVKKSKGMNFRTLLIIALSSVAFLLVLVAAISIFIKWKKYGKPSNAVGPTFPSSINK RSGLGSFLSGSIASSTSMSLMSNMAPCMLSVKTFTFVELDRATEKFSSKRILGVGGFGCVYHGIMEDKTEVAVKVLTRDNQNGDREFIAEVEMLSRLHHR NLVKLIGICIEGRTRCLVYELVHNGSVESHLHGVDKRKGYLDWDARLKIALGSARGLAYLHEDSNPRVIHRDFKGSNILLEDDFTPKVSDFGLAKEATEG SHHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPQGQENLVTWARPLLTTREGLEQLVDPSLARRYNFDDMAKVAAIASMC VHPEVTNRPFMGEVVQALKLIYNDTDDTGADNYSQKEESSALDSDFKGGDFVASDSSWWNAGAISPHLTYGQASPFITMEYSSGPLEDMENRPVSVSSFS SPVRHGNRSGPLRTIRSKPSFYRFRGSMSDHGGDPRPARRSANDGYWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	0	1
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	1.0	0.9477
AT5G10190			Major facilitator superfamily ...		Lus10027264 [exp]	2.4	0.8246
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012390 [exp]	2.8	0.8839
					Lus10005785 [exp]	3.2	0.8476
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10025892 [exp]	3.5	0.8721
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	5.5	0.8140
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	5.7	0.8023
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10003666 [exp]	6.6	0.8594
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	11.0	0.7655
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	13.0	0.7727

Compare expression of checked genes

Lus10022848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.