Plant FIBer expression Database

Lus10022849 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G58610 934 / 0 ketol-acid reductoisomerase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011918
[exp]
1056 / 0 AT3G58610 980 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G052700
[exp]
952 / 0 AT3G58610 989 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.004G043700
[exp]
945 / 0 AT3G58610 981 / 0.0 ketol-acid reductoisomerase (.1.2.3)
Potri.014G055100
[exp]
321 / 5e-107 AT3G58610 340 / 2e-114 ketol-acid reductoisomerase (.1.2.3)
Potri.019G089532
[exp]
186 / 4e-53 AT3G58610 164 / 2e-45 ketol-acid reductoisomerase (.1.2.3)
Potri.019G089366
[exp]
122 / 4e-33 AT3G58610 154 / 7e-46 ketol-acid reductoisomerase (.1.2.3)
Potri.013G117532
[exp]
150 / 7e-06 AT3G58610 0 / 1 ketol-acid reductoisomerase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0106 6PGD_C PF01450 IlvC Acetohydroxy acid isomeroreductase, catalytic domain
CL0063 NADP_Rossmann PF07991 IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence
>Lus10022849 pacid=23159962 polypeptide=Lus10022849 locus=Lus10022849.g ID=Lus10022849.BGIv1.0 annot-version=v1.0
ATGGCCGCCACCGCCGCCGCCGCCGCCATAACTCATGCGGTCTCCTCAACTCCGTCATCCTCTCTCAAGCCCAAGGCGTCGAGCTTCAGCTCCGTCGGAT
TCACTTCGTCGGCGAAGCCCCTAGTATCTCGCATCATTTCCTCCCGCGGCGGACGATCCTCTCGGATGACCGTTTCCATGGTGTCCACCCCTGCTGCTGT
CGTTCCCACGACGTCGCTGGACTTCCAGACGTCCGTGTTCAAGAAGGAGAAGATCAGCCTTGCTGGCCATGATGAGTACATTGTGAGGGGAGGGAGGGAT
TTGTTCCCGCTGTTACCTGAAGCTTTCAAGGGGATTAAGCAAATTGGAGTCATCGGCTGGGGATCTCAGGCTCCTGCCCAAGCTCAGAACCTGAAGGATT
CTTTAGTTGAGGCGAAATCTGATATTGTTGTTAAGATTGGGCTGAGGAAGGGTTCAAGTTCATTTGCCGAGGCTCGTGCTGCTGGGTTCTCTGAAGAGGA
TGGTACCCTGGGAGATATGTGGGAGACTATTTCTGGAAGTGATCTTGTTATGCTTCTTATTTCGGATGCAGCTCAGGCTGATAACTTTGAGAAGATCTTA
TCTTACATGAAGCCCAACAGCATCCTTGGTCTTTCCCATGGGTTTCTCTTGGGACATCTGCAGAGTTTGGGGAAGGATTTCCCTAAGAATATTAGTGTGA
TTGCTGTTTGTCCTAAAGGAATGGGCCCGTCCGTGAGGAGGCTCTACGTGCAAGGGAAAGAGGTCAATGGTGCTGGCATCAACTCAAGTTTTGCTGTCCA
TCAGGATGTTGATGGCAGAGCAACTGATGTTGCCTTGGGTTGGTCTGTTGCTCTTGGTTCTCCATTCACATTTGCCACTACCTTGGAGCAGGAGTATAAG
AGTGATATTTTCGGCGAGCGTGGTATTCTGCTTGGTGCTGTTCATGGTGCCGTTGAATGCTTGTTCAGAAGATACACCGAAAATGGAATGGACGAGGATT
CAGCCTATAAGAACACTGTCGAGTGCATCACTGGAATTGTATCGAGGACCATCTCAACAAAGGGTATGTTGGCAGTGTACAACTCCTTGTCTGAAGATGA
AAAGAAAGAGTTTGAGCTTGCTTATAGCTCGTCTTTCTATCCTTGCATGGACATCTTGTACGAGTGTTACGAGGATGTTGCCAGTGGCAGTGAGATCCGT
AGTGTTGTTCTTGCTGGACGTCGATTCTACGAAAAGGAAGGCCTCCCAGCTTTCCCCATGGGCAAGATCGATCAAACCCGGATGTGGAAGGTCGGTGAGC
GTGTACGTTCAACTAGGCCGAAGGGTGACTTGGGTCCGATGCACCCTTTCACTGCTGGTGTTTTCGTCGCTTTAATGATGGCCCAGATCGAGGTGTTGAG
GAAGAAGGGTCATTCATACTCAGAGATCATCAACGAAAGTCTGATCGAGGCAGTCGATTCCCTGAACCCGTTCATGCACGCTCGCGGAGTTTCCTTCATG
GTCGACAACTGCTCCACCACCGCTCGTCTGGGATCGCGAAAGTGGGCCCCCCGATTCGACTATGTCCTCACTCAGCAGGCGTTTGTAGCCGTCGATGCTG
GTTCGTCCGTCAACAGGGACCTCATGAGCAACTTTTTCTCCGACCCGGTCCACGGAGCCATCGAAGTGTGTGCACAGCTGAGACCAACCGTCGACATCTC
TGTTCCTGCGGATGCTGACTTTGTCCGCCCCGAGCTGCGTCAGGGCAACTAA
AA sequence
>Lus10022849 pacid=23159962 polypeptide=Lus10022849 locus=Lus10022849.g ID=Lus10022849.BGIv1.0 annot-version=v1.0
MAATAAAAAITHAVSSTPSSSLKPKASSFSSVGFTSSAKPLVSRIISSRGGRSSRMTVSMVSTPAAVVPTTSLDFQTSVFKKEKISLAGHDEYIVRGGRD
LFPLLPEAFKGIKQIGVIGWGSQAPAQAQNLKDSLVEAKSDIVVKIGLRKGSSSFAEARAAGFSEEDGTLGDMWETISGSDLVMLLISDAAQADNFEKIL
SYMKPNSILGLSHGFLLGHLQSLGKDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYK
SDIFGERGILLGAVHGAVECLFRRYTENGMDEDSAYKNTVECITGIVSRTISTKGMLAVYNSLSEDEKKEFELAYSSSFYPCMDILYECYEDVASGSEIR
SVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPKGDLGPMHPFTAGVFVALMMAQIEVLRKKGHSYSEIINESLIEAVDSLNPFMHARGVSFM
VDNCSTTARLGSRKWAPRFDYVLTQQAFVAVDAGSSVNRDLMSNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G58610 ketol-acid reductoisomerase (.... Lus10022849
[exp]
0 1
AT3G58610 ketol-acid reductoisomerase (.... Lus10011918
[exp]
1.0 0.9198
AT4G36680 Tetratricopeptide repeat (TPR)... Lus10024025
[exp]
1.4 0.8968
AT3G48560 TZP5, IMR1, ALS... TRIAZOLOPYRIMIDINE RESISTANT 5... Lus10022446
[exp]
2.4 0.8834
AT4G29840 TS, MTO2 THREONINE SYNTHASE, METHIONINE... Lus10003317
[exp]
3.9 0.8541
AT4G13990 Exostosin family protein (.1) Lus10007037
[exp]
6.5 0.8399
AT4G23620 Ribosomal protein L25/Gln-tRNA... Lus10011005
[exp]
8.9 0.8601
AT4G00231 MEE50 maternal effect embryo arrest ... Lus10007356
[exp]
9.2 0.8382
AT5G08490 SLG1 SLOW GROWTH 1, Tetratricopepti... Lus10016943
[exp]
11.0 0.8260
AT1G62730 Terpenoid synthases superfamil... Lus10024610
[exp]
12.0 0.8109
AT2G31240 Tetratricopeptide repeat (TPR)... Lus10003563
[exp]
15.5 0.8341

Lus10022849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.