Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43900 2305 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G04160 2288 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT4G28710 2227 / 0 ATXIH, XIH MYOSIN XI H, Myosin family protein with Dil domain (.1) AT1G54560 2005 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT2G20290 1998 / 0 ATXIG, XIG MYOSIN XI G, myosin-like protein XIG (.1) AT5G20490 1962 / 0 XI-17, ATXIK, XIK MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) AT1G08730 1948 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G17580 1843 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT2G31900 1817 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) AT4G33200 1542 / 0 XI-15, ATXI-I, XI-I MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005521 [exp] 2028 / 0 AT1G54560 2686 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Lus10021570 [exp] 1973 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10023696 [exp] 1936 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10003315 [exp] 1933 / 0 AT5G20490 2479 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10032597 [exp] 1868 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10017160 [exp] 1808 / 0 AT5G20490 2476 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Lus10009791 [exp] 1464 / 0 AT1G04160 2103 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Lus10038072 [exp] 1340 / 0 AT4G33200 1982 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Lus10011919 [exp] 1278 / 0 AT5G43900 978 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254300 [exp] 2601 / 0 AT1G04160 2412 / 0.0 MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) Potri.008G174500 [exp] 2286 / 0 AT5G43900 2206 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Potri.013G043900 [exp] 2013 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.006G145700 [exp] 2001 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.019G013800 [exp] 1992 / 0 AT1G54560 2616 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G199200 [exp] 1981 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.009G025300 [exp] 1880 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G233100 [exp] 1877 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.006G220000 [exp] 1588 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.002G041800 [exp] 1278 / 0 AT1G08730 1447 / 0.0 MYOSIN XI C, Myosin family protein with Dil domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0023 [flax] [poplar] P-loop_NTPase PF00063 [flax] [poplar] Myosin_head Myosin head (motor domain) CL0010 [flax] [poplar] SH3 PF02736 [flax] [poplar] Myosin_N Myosin N-terminal SH3-like domain CL0010 [flax] [poplar] PF01843 [flax] [poplar] DIL DIL domain
Representative CDS sequence Show only first row Show all	>Lus10022850 pacid=23160053 polypeptide=Lus10022850 locus=Lus10022850.g ID=Lus10022850.BGIv1.0 annot-version=v1.0 ATGCTGGGCCCAAATCGGGCTGCTACTGTTAGTCTGGCCGTTGGGTCTCTTGTTTGGGTGGAGGATCCTGATACAGCCTGGATAGATGGAGAGGTCGCGG AGATCAAGGGTGAAGATGTTAAAGTCCTATGCACAACTGGGAAAACAGTTTCTGTCAAGGCTTCCAATGTTTATCATAAAGACACAGAAGCTCCACCATG TGGTGTGGATGATATGACAAGGCTTTCGTATTTGCATGAACCCGGAGTCTTGCAGAATCTCAGATCTAGATATGATATGAATGAAATTTATACATATACA GGCAGCATATTAATTGCCGTGAATCCATTCATGAGGCTACCACATCTGTATGATATCCATATGATGCAACAATATAAAGGTGCATCCTTTGGCGAGCTAA GTCCACATCCTTTTGCAGTTGCAGATGTTGCATACAGACAGATGATAAGTGAAGGAATCAGTCAGTCGATTTTAGTCAGTGGTGAGAGTGGTGCTGGTAA AACAGAAAGTACAAAATTGCTCATGCGGTATCTGGCATACATGGGAGGAAGATCTGCTGGTGAGGAGAGGAGTGTTGAGCAGCAGGTTCTGGAGTCAAAT CCTGTTTTGGAAGCATTTGGTAACGCAAAAACTGTTAGAAACAACAACTCAAGTCGTTTTGGTAAGTTCGTCGAGCTTCAATTTGACCAGAAGGGAAGGA TTTCAGGAGCTGCAGTCAGAACTTATTTGCTGGAAAGATCACGTGTTTGTCAGGTTTCTGATCCTGAGAGAAATTATCACTGTTTCTACATGCTTTGTTC GGGACCACCAGAGGAAGTTCAAAAGTACAAATTGGGAAACCCAAGGACGTTTCATTACCTGAATCAATCAAATTGCTATGAGCTTGATGGTGTTGATGAT GCCAAGGAATATATGGATACCAAAAGGGCTATGGATGTTGTTGGAATAAGTGGTGATGAGCAGGAGGCTATATTTCGAGTTGTGGCAGCAATCCTTCATC TTGGGAACATTGAATTTTCCAAAGGGAAAGAGATGGACTCTTCGTTGCCCAAAGATGAGAAATCTCACTTCCACATGACAACTGCATCAGAGTTACTGAT GTGTGATGTAAAGGCCCTAGAAGACTCTCTTTGTAAGCGTGTAATGGTAACTCGTGATGAAACCATCACAAAGTGGCTGGACCCAGAATCTGCAGCTCTT AGCAGAGATGCACTGGCTAAAACTCTATATTCAAGGCTGTTTGATTGGATTGTCGACAAGATTAATAATTCAATTGGTCAGGACCCTAACTCAAAGTCCT TAATAGGAGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACGAACAGTTTTGAGCAGTTCTGCATCAATTTGACCAACGAGAAGCTTCAGCAGCATTT CAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATATACAAAGGAAGAAATTGATTGGAGTTACATTGAGTTTGTCGATAATCAGGATATTCTAGATCTT ATTGAAAAGAAGCCTGGTGGTATAATTGCTCTTTTGGATGAAGCTTGCATGTTTCCCAGATCAACACACGACACATTTGCTCAGAAGTTATATCAGACTT TTAAGAACCATAAAAGGTTCAGCAAGCCAAAACTAGCACGGAGTGACTTCACTATTCATCATTATGCTGGTGATGTCACATACCAAACAGAGCTGTTCCT GGACAAGAATAAAGACTACGTTGTTGCTGAACATCAGGCGCTCTTGAATGCGTCCAGCTGTTCCTTTGTCGCAAGCTTGTTTGTGCCTTCACCTGAAGAA TCCTCTAATAAATCCAAATTCTCTTCAATTGGCACCCGTTTTAAGCAACAATTAGTATCTTTGCTTGAAACTCTCAGCTCTACAGAGCCACATTACATAC GGTGTGTGAAGCCCAATAATCTTCTTAAACCTGCTATCTTTGAGAGCAAGAATGTTCTTCAGCAACTGCGTTGTGGGGGGGTCATGGAAGCAATTAGGAT TAGTTGTGCTGGATATCCCACTAGAAAGCCTTTTGATGAATTCGTTGATCGGTTTGGAATTCTCGCTCCGGAAGTGTTAGATGCAAGGTCCGATGAAGTC ACTGCATGCAAGAAACTTTTGGAGAAGGTTGCCCTGGAAGGTTATCAGGTTGGTAAGTCAAAGATTTTTCTCCGGGCTGGTCAAATGGCAGAATTAGATG CTCGTAGGACTGAAGTATTAGGAAGATCAGCAAGCATCATTCAGAGGAAGGTCCGCGCTTATCTATCCAGGAGAACATTTATCCTAATACGGCGCTCTGC CATACAAATGCAAGCCGTATGCAGAGGTCAGCTTGCTCGGGATCGTTATGAAAGCATGCGAAGACAGGCTGCTTGTCTCAGGATCCAGACAGACTTGCGT ATGTATGTTGCAAGGAGAACTTACAGAGAACTGTGTTCCTCTGCCATTTCCATACAGTCAGGTATTCGTGGGATGGCTGCTCGTGAAGACTTAGGATTCA GAAGGCGGACTAGAGCAGCAATCATAATTCAGGCAAGACAATTGAGTTGTACAATGAAGTTCTATAGTCACTGTCGCAAATTCTTGGCTCGGTTGCATTA CACAAGATTGAAGAAAGCAGCAATTGCAACTCAGTGTGCATGGAGGGGAAAAGTTGCTCGCGGAGAACTCAAGAAGCTTAAGATGGCTGCTAGAGAGACT GGAGCACTTCAGGCGGCCAAAAATAAGTTGGAAAAGCAAGTTGAAGAGTTGACATGGAGACTTCAGCTTGAGAAACGCATGAGGTCTGATCTGGAAGAAA CTAAAACACTTGAAAATACGAAGCTACAATCAGCTTTGCAAGAAATGCAACTCCAGTTCAAAGAAACCAAAGAAATGCTTGCAAAGGAGCGCGATGCTGC TAAGAAGGTAGCAGAAATTGTCCCTGTAATACAAGAGATTCCAGTGGTTGACAATGTAATGATGGAGAAGCTGACAGCTGAAAATGAGAAGCTCAAGGCT ATGGTAAATTCGCTGGAACAGAAAATTGACGAGACTGAAAAGAAGTTTGAAGAGACGAGCAGAATAAGTGAAGAGCGACTGAAGCAAGCTCTAGAAGCAG AGTCAAAAATAGTTGAACTCAAGACTGCTATGCATAGACTTGAAGAAAAGTTTTTGGACATTGAAACTGAAAATCATGTGCTTCGGCAGCATACTTCAAC AGAGACTTCTGCCAAGAAGCCATTTGATAGACCACCAGTTCCACCGGGTCCACCATCTCATAGCTCAGAAAATGGTCACCTCAATGAGGAGAGCAGAGCC AATGAATCACCGAGTGGAACACCTGTAAAGGCTTATGGTATAGAGGCAGATGGCAGGTTTAGGAGGTCACATATCGAACGCCAACATGAGAGCATTGATG CGCTTATCAACTGCGTTACAAGTAACATCGGGTTCAGTCAAGGTAAACCGGTTGCAGCTTTTACCATATACAAGTGTCTTCTTCATTGGAAGTCTTTTGA AGCAGAAAGGACTAGTGTGTTTGATCGTCTCATTCAAATGATTGGTTCTGCAATTGAGAATGAGGATAACAATGATCACATGGCTTACTGGTTATCAAAT ACCTCGGCTCTATTGTTTTTACTGCAAAAGAGTCTAAAAGCAGCTGGTGCAAATGGTGCAACTCCAAATCGTAAACCCTCCTCTGCTGCATCCTTGTTTG GCAGAATGGCAATGGGTTTCCGCTCATCACCTTCTTCCAATAGCCTCGCTGCCGTATTTACTGTAGTGCGCCAAGTGGAAGCCAAGTATCCAGCTTTGCT TTTCAAGCAGCAGCTTGCGGCTTACGTGGAGAAAATTTATGGAATTATTCGAGACAACTTGAAGAAGGAACTGACATCTTTGCTTTCCTTATGCATCCAA GCGCCTAGGACCTCAAAGGCAAGTGTTCTGAAATCAGGGCGGTCATTTGGCAAGGATGCTGCATCAAGTCACTGGCAGGGAATTATTGATAGTCTCAACA ATCTTCTCAGCACACTGAAACAAAATTTCGTGCCTCCAGTCCTTATCCAGAAGATCTACACTCAAACTTTCTCGTACATCAATGTACAATTGTTCAATAG CCTTCTTCTGCGTCGCGAGTGTTGTACATTCAGTAACGGTGAATATGTCAAATCTGGATTAGCTGAACTGGAGCTATGGTGCTGTCAAGCGAAGGACGAG TATGCGGGGACATCTTGGGAAGAACTTAAGCATATAAGACAAGCTGTTGGGTTCTTGGTTATACATCAGAAGTATCGGATATCGTATGATGAAATAACCA ATGATCTATGCCCCATCTTGAGCGTGCAACAGTTGTACAGAATTTGTACACTCTACTGGGATGACAACTACAACACCAGAAGTGTCTCTCCTGATGTCAT CTCGAACATGAGGATACTTATGACTGAGGACTCCAACAGTGCTGTCAGCAGTTCCTTTTTGCTAGATGACAATTCTGGAATCCCATTCTCGGTTGAGGAC CTCTCGAATTCGATGCAAGAGAAGGATTTCGCAGATGTGGAGGCAGCAGAAGATCTGGTTGAAAATCCAGCCTTCCAATTTTTACAGGAGTAA
AA sequence Show only first row Show all	>Lus10022850 pacid=23160053 polypeptide=Lus10022850 locus=Lus10022850.g ID=Lus10022850.BGIv1.0 annot-version=v1.0 MLGPNRAATVSLAVGSLVWVEDPDTAWIDGEVAEIKGEDVKVLCTTGKTVSVKASNVYHKDTEAPPCGVDDMTRLSYLHEPGVLQNLRSRYDMNEIYTYT GSILIAVNPFMRLPHLYDIHMMQQYKGASFGELSPHPFAVADVAYRQMISEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRSAGEERSVEQQVLESN PVLEAFGNAKTVRNNNSSRFGKFVELQFDQKGRISGAAVRTYLLERSRVCQVSDPERNYHCFYMLCSGPPEEVQKYKLGNPRTFHYLNQSNCYELDGVDD AKEYMDTKRAMDVVGISGDEQEAIFRVVAAILHLGNIEFSKGKEMDSSLPKDEKSHFHMTTASELLMCDVKALEDSLCKRVMVTRDETITKWLDPESAAL SRDALAKTLYSRLFDWIVDKINNSIGQDPNSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDILDL IEKKPGGIIALLDEACMFPRSTHDTFAQKLYQTFKNHKRFSKPKLARSDFTIHHYAGDVTYQTELFLDKNKDYVVAEHQALLNASSCSFVASLFVPSPEE SSNKSKFSSIGTRFKQQLVSLLETLSSTEPHYIRCVKPNNLLKPAIFESKNVLQQLRCGGVMEAIRISCAGYPTRKPFDEFVDRFGILAPEVLDARSDEV TACKKLLEKVALEGYQVGKSKIFLRAGQMAELDARRTEVLGRSASIIQRKVRAYLSRRTFILIRRSAIQMQAVCRGQLARDRYESMRRQAACLRIQTDLR MYVARRTYRELCSSAISIQSGIRGMAAREDLGFRRRTRAAIIIQARQLSCTMKFYSHCRKFLARLHYTRLKKAAIATQCAWRGKVARGELKKLKMAARET GALQAAKNKLEKQVEELTWRLQLEKRMRSDLEETKTLENTKLQSALQEMQLQFKETKEMLAKERDAAKKVAEIVPVIQEIPVVDNVMMEKLTAENEKLKA MVNSLEQKIDETEKKFEETSRISEERLKQALEAESKIVELKTAMHRLEEKFLDIETENHVLRQHTSTETSAKKPFDRPPVPPGPPSHSSENGHLNEESRA NESPSGTPVKAYGIEADGRFRRSHIERQHESIDALINCVTSNIGFSQGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENEDNNDHMAYWLSN TSALLFLLQKSLKAAGANGATPNRKPSSAASLFGRMAMGFRSSPSSNSLAAVFTVVRQVEAKYPALLFKQQLAAYVEKIYGIIRDNLKKELTSLLSLCIQ APRTSKASVLKSGRSFGKDAASSHWQGIIDSLNNLLSTLKQNFVPPVLIQKIYTQTFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKDE YAGTSWEELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPDVISNMRILMTEDSNSAVSSSFLLDDNSGIPFSVED LSNSMQEKDFADVEAAEDLVENPAFQFLQE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	7.2	0.8853
AT2G45540			WD-40 repeat family protein / ...		Lus10015857 [exp]	8.0	0.9132
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	8.5	0.8902
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	8.5	0.9097
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030848 [exp]	9.1	0.9126
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	9.3	0.8489
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10037525 [exp]	10.7	0.9102
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	14.4	0.8566
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Lus10023408 [exp]	14.5	0.8936
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	15.4	0.8750

Compare expression of checked genes

Lus10022850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.