Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28720 640 / 0 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G43890 615 / 0 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT1G04180 605 / 0 YUC9 YUCCA 9 (.1) AT1G04610 605 / 0 YUC3 YUCCA 3 (.1) AT2G33230 565 / 0 YUC7 YUCCA 7 (.1) AT5G25620 460 / 6e-161 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 457 / 4e-160 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 445 / 4e-155 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT4G13260 444 / 6e-155 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G21430 340 / 2e-114 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011274 [exp] 676 / 0 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 592 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 577 / 0 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10043142 [exp] 514 / 0 AT1G04610 599 / 0.0 YUCCA 3 (.1) Lus10007671 [exp] 465 / 2e-162 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 457 / 8e-160 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 456 / 1e-159 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10000494 [exp] 449 / 1e-159 AT4G28720 318 / 2e-108 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 448 / 3e-156 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254200 [exp] 719 / 0 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 622 / 0 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 583 / 0 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.006G243400 [exp] 484 / 2e-170 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 479 / 2e-168 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 469 / 1e-164 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.018G033200 [exp] 453 / 2e-158 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 453 / 2e-158 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.005G111800 [exp] 349 / 6e-118 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.016G003300 [exp] 342 / 2e-115 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10022851 pacid=23159953 polypeptide=Lus10022851 locus=Lus10022851.g ID=Lus10022851.BGIv1.0 annot-version=v1.0 ATGGAGAATCTCTTCCGATTAGCCGATAACGACGACATCTTCTCCCGGCGATGCATCTGGGTGAACGGCCCGATCATCGTCGGCGCCGGACCTTCAGGGC TAGCCTCCGCCGCTTGCCTCCGTGACCAAGGCGTCCCGTTCTTGGTCCTTGAGAAAGAGGACTGCATTGCTTCGCTGTGGCAGAAGCGTACCTACGACAG GCTGAAGCTTCACCTCCCTAAGCAATTCTGTCAGCTCCCGAAAGTCCCATTCCCTGAGGATTTCCCAGAGTACCCGAACAAGAACCAGTTCGTTCAGTAC CTCGAATCCTACGCTCAGAAGTTCGAGATCAACCCCAAATTCAATGAGTGCGTCCAGTCCGCTAGGTACGACGAAACCAGTGGCCTATGGAGGGTCAAGA CCGTTTCTACTATCGGCTCTTTTCGTACCATTCGTACAGAGTTCGAGTACATCTGTAGGTGGCTCGTCGTCGCTACCGGCGAGAATGCCGAGTGCGTAAT GCCGGATATCGACGGACTGGCAGAGTTCGGCGGTGAAGTCATCCACGCTTCCGATTACAAGTCCGGCGATAAGTACAAGGGGAAGAAAGTCCTCGTTGTC GGCTGCGGTAACTCCGGGATGGAAGTTTCTTTCGATCTCGCCAACCACAACGCTTCTCCTTCCATGGTCGTTCGCAGCTCGGTCCACGTACTTCCAAGGG AAATCTACGGAAAATCGACATTCGAGCTAGCGGTCCTCCTAATGAGCTGGCTACCACTCTGGTTAGTCGACAAGATCCTCTTGATCTTGACATGGCTAGT AATGGGAAGCCTGAAATCCTACGGATTATCCCGGCCGTCCATCGGTCCACTGACTCTGAAAAACACAGAAGGGAAAACCCCTGTTCTCGACGTCGGAGCG CTACAGAGGATCAAATCCGGATCAATCAAAGTAGTCCCAGGGATCAAGCGATTCGGAGAAGGAACGGTGGAGCTCATCAATGGAGAAATCCTCGAAATCG ACTCGGTGGTAATGGCGACTGGGTACAGAAGCAATGTTCCTTACTGGCTTCAAGAGAGTGAGCTTTTCTCCAAGAACGGTTACCCTAAAGCTGCTTTCCC ACATAGCTGGAAGGGAAAATCGGGGCTTTACGCAGTTGGGTTCACAAAGAGAGGGCTGTCTGGTGCTTCTGCCGACGCTGTTAAGATCGCTAATGATATT GGTGAGGTGTGGAAGAAGGAGACTAAGCAGCAGAAACAGAGGAATACTGCCTGCCACAGGCGCTGCATTTCCCAGTTCTGA
AA sequence Show only first row Show all	>Lus10022851 pacid=23159953 polypeptide=Lus10022851 locus=Lus10022851.g ID=Lus10022851.BGIv1.0 annot-version=v1.0 MENLFRLADNDDIFSRRCIWVNGPIIVGAGPSGLASAACLRDQGVPFLVLEKEDCIASLWQKRTYDRLKLHLPKQFCQLPKVPFPEDFPEYPNKNQFVQY LESYAQKFEINPKFNECVQSARYDETSGLWRVKTVSTIGSFRTIRTEFEYICRWLVVATGENAECVMPDIDGLAEFGGEVIHASDYKSGDKYKGKKVLVV GCGNSGMEVSFDLANHNASPSMVVRSSVHVLPREIYGKSTFELAVLLMSWLPLWLVDKILLILTWLVMGSLKSYGLSRPSIGPLTLKNTEGKTPVLDVGA LQRIKSGSIKVVPGIKRFGEGTVELINGEILEIDSVVMATGYRSNVPYWLQESELFSKNGYPKAAFPHSWKGKSGLYAVGFTKRGLSGASADAVKIANDI GEVWKKETKQQKQRNTACHRRCISQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10022851 [exp]	0	1
AT3G11590			unknown protein		Lus10013311 [exp]	4.1	0.9340
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	11.8	0.9257
AT3G11590			unknown protein		Lus10013312 [exp]	15.2	0.8993
AT1G33260			Protein kinase superfamily pro...		Lus10016382 [exp]	17.3	0.8987
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10039902 [exp]	19.3	0.9279
AT2G20520		FLA6	FASCICLIN-like arabinogalactan...		Lus10017696 [exp]	21.3	0.9161
AT1G15410			aspartate-glutamate racemase f...		Lus10014492 [exp]	23.5	0.8333
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Lus10017655 [exp]	24.3	0.9269
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	27.9	0.8731
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	29.7	0.9249

Compare expression of checked genes

Lus10022851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.