Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04140 432 / 1e-141 Transducin family protein / WD-40 repeat family protein (.1.2) AT5G43930 394 / 1e-127 Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G49660 71 / 6e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 69 / 3e-12 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 67 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 59 / 1e-08 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 57 / 3e-08 TAF5 TBP-associated factor 5 (.1) AT5G23430 57 / 4e-08 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 56 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 56 / 6e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000495 [exp] 831 / 0 AT1G04140 914 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Lus10003487 [exp] 67 / 1e-11 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 66 / 2e-11 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 64 / 4e-10 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 64 / 4e-10 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003206 [exp] 59 / 1e-08 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 58 / 1e-08 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 58 / 1e-08 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 57 / 5e-08 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254700 [exp] 562 / 0 AT1G04140 905 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G193900 [exp] 556 / 0 AT1G04140 904 / 0.0 Transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 71 / 7e-13 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 70 / 7e-13 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 69 / 3e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 63 / 6e-10 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 59 / 6e-09 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 59 / 1e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 57 / 2e-08 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G144400 [exp] 57 / 3e-08 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10022852 pacid=23160055 polypeptide=Lus10022852 locus=Lus10022852.g ID=Lus10022852.BGIv1.0 annot-version=v1.0 ATGTCCCGGGATTGGACTAATAAGGATATGTCCGGCCGTCTCCTGCCGCCAGATCAGAATTCTATCCAATCTGTTCGGTCCAGTAATTTTGCCCACAGTA CTAGGAAGAACGTTCTGCGCTTGTTAGCGCGGAGGGAGATATGTCCTCGAGGGAAGCATGTGCCGAAGAAGGGGTGGGGAGAGGCTTCTCGTTGGAATGT TAATTCACCATCGGAGCTGAAAAGTGAACCGTCAAGAGATCCCAAACGTGATCTTATTTCATGGGTTGAGGCGGAATCATTGCGGCATTTATCGGCCAAA TATTGTTCTCTGATGCCTCCTCCAAGGTCGACCATTGCGGCGGCTTTTAGTCCTGATGGGAAAACACTTGCATCGACGCATGGTGATCACACTGTCAAGA TTATTGATTGTCAAACTGGGAAGTGCTTGAAGGTGTTGAATGGTCATCGGAGAACCCCTTGGGTGGTTAGGTTTCATCCACTCCATTCGGAAATTCTTGC AAGCGGTAGCTTGGATCATGAAGTACGTTTGTGGGATGCTAAGACAGCAGAGTGCGTAGGATTTCGTGATTTTAGTCGTCCTATTGCATCCATTGCTTTC CACGCAGAGGGTCAATTGCTTGCTGTTGCGTCAGGTCACAAGTTGTACATATGGCATTACGATAAAAGAGTGGAGGCCTCTTCACCAACCGTTGTTTTGA GGACTAAGCGTTCTCTTAGAGCAGTGCATTTTCACCCTCATGCTGCCCCGTTCCTCCTGACAGCCGAGGTTAATGATCTTGACTCTTCAGATTCCTTGAT GTCAAGGGCTACATCTCCAGGATATTTAAAATATCCTCCTCCTGCTGTTTTTGTGGCAAATGTTCAGTCCAGTGAGCGTGTAAATGTTGCTGCTGAACTA CCACTTATGTCCCTCCCTTCCTTGTTCATGCCTTCATTTCCTGTAGATGATACTAGATTAAATGATAATAGAGATGTTAGTTCAAGCACAATGCAAGTGG AGTCTTCTACTCCTATACGTGTCCAAATGGAGATGACCGCACAGATAGAGGCATACCCAGAAATAATTCCAGGCTCATTCCGGACTATAAACAGTGGAGA AAGTAATTACATGCCTACTAGAGTTGGAACGTCTGCCGGTGTTGAAGATGCCATGGAAACAGATGAAGTACCACATACGAGGACAAATCAACTAGAAATA AATGCTTTCATTGAAGGCAATACTGCTGCAGTTGGAGGTAATGCACAGGGCTCAGTTCGGCAGCAGTTGACAGAGTTTGGGCAAGTTAATCAGTTTTTGC CCCCAAGAGATCCGGTTTTGTGGGAGGTACCATTTTTGCAAGGATGTGAGATGGGTGCTCACTTTTCCCCTTGCGGAAGATATTTGGCTGCCTGTGTTGC ATGTACTCTTCCCCATATGGAAGGTGATCCAGGATTACCGACATTAGTACATAATGATGCTGGAGCTGCAACATCTCCTACTCGACACCCGATCTCTGCT CACCAAGTTATGTATGAGCTTCGGATATATTCCTTGGAGGAGGCAACTTTTGGTTCCGTGCTTGTATCCCGTGCAATTAGAGCTGCACACTGTTTGACTT CTATACAGTTCTCTCCTACTTCTGAGCATATATTACTGGCTTATGGTCGCCGTCATGGGTCTCTTCTTAAGAGCATTGTTATCGATGGGGAGACGACATC ACCAATTTACACGGTTTTGGAGGTCTACCGAGTTTCAGATATGGAACTTGTGAGAGTGCTTCCTAGTGCAGAGGACGAGGTCAATGTTGCTTGCTTTCAT CCATTTGCCGGGGGAGGTCTAGTCTATGGAACCAAGGAGGGAAGGCTTAGGGTCTTGCAGTATGATAGTGCCCATGGATCAAATTGCTCTGGGCCAAATT ACTTTACCGATGATAACTTGGCTGAGGTAAACGTGAGCAAAAATTACCCGTTCCTTTGA
AA sequence Show only first row Show all	>Lus10022852 pacid=23160055 polypeptide=Lus10022852 locus=Lus10022852.g ID=Lus10022852.BGIv1.0 annot-version=v1.0 MSRDWTNKDMSGRLLPPDQNSIQSVRSSNFAHSTRKNVLRLLARREICPRGKHVPKKGWGEASRWNVNSPSELKSEPSRDPKRDLISWVEAESLRHLSAK YCSLMPPPRSTIAAAFSPDGKTLASTHGDHTVKIIDCQTGKCLKVLNGHRRTPWVVRFHPLHSEILASGSLDHEVRLWDAKTAECVGFRDFSRPIASIAF HAEGQLLAVASGHKLYIWHYDKRVEASSPTVVLRTKRSLRAVHFHPHAAPFLLTAEVNDLDSSDSLMSRATSPGYLKYPPPAVFVANVQSSERVNVAAEL PLMSLPSLFMPSFPVDDTRLNDNRDVSSSTMQVESSTPIRVQMEMTAQIEAYPEIIPGSFRTINSGESNYMPTRVGTSAGVEDAMETDEVPHTRTNQLEI NAFIEGNTAAVGGNAQGSVRQQLTEFGQVNQFLPPRDPVLWEVPFLQGCEMGAHFSPCGRYLAACVACTLPHMEGDPGLPTLVHNDAGAATSPTRHPISA HQVMYELRIYSLEEATFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFH PFAGGGLVYGTKEGRLRVLQYDSAHGSNCSGPNYFTDDNLAEVNVSKNYPFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04140			Transducin family protein / WD...		Lus10022852 [exp]	0	1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	1.0	0.9047
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	1.4	0.8965
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	4.2	0.8796
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10042900 [exp]	5.0	0.8592
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	6.2	0.8358
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10010197 [exp]	10.9	0.8548
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	12.2	0.8171
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	13.3	0.8490
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	13.6	0.8224
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	13.7	0.8612

Compare expression of checked genes

Lus10022852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.