Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43940 673 / 0 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G77120 430 / 4e-148 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G24760 370 / 2e-124 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G64710 360 / 2e-120 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G32780 354 / 3e-118 GroES-like zinc-binding dehydrogenase family protein (.1) AT5G42250 325 / 7e-107 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 316 / 2e-103 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 303 / 3e-98 Zinc-binding alcohol dehydrogenase family protein (.1) AT4G22110 301 / 1e-97 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 115 / 1e-27 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000496 [exp] 758 / 0 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10029759 [exp] 419 / 6e-144 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 419 / 7e-144 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10010506 [exp] 414 / 8e-142 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 411 / 1e-140 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 397 / 2e-135 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10031890 [exp] 318 / 2e-104 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10004786 [exp] 314 / 1e-102 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004785 [exp] 311 / 3e-101 AT1G22430 536 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254900 [exp] 678 / 0 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 669 / 0 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.007G108701 [exp] 439 / 1e-151 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 437 / 6e-151 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 436 / 2e-150 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108601 [exp] 435 / 3e-150 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 435 / 4e-150 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060000 [exp] 431 / 3e-148 AT1G77120 658 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 430 / 3e-148 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 430 / 4e-148 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10022853 pacid=23159999 polypeptide=Lus10022853 locus=Lus10022853.g ID=Lus10022853.BGIv1.0 annot-version=v1.0 ATGGCGACTCAGGGAAAAGTTATCACATGCAAAGCTGCTGTGGCGTGGGAACCTAACAAGCCGCTGGTGATCGAGGACGTTCAGGTAGCTCCGCCTCAGG CTGGTGAGGTCCGCATCAAGATCCTCTTCACTGCTCTCTGCCACACTGATGCCTACACTTGGAGCGGCAAGGATCCTGAAGGCCTCTTCCCTTGCATTCT TGGTCACGAGGCTGCTGGGATTGTTGAGAGTGTTGGGGAAGGTGTGACTGAGGTGCAACCTGGGGATCATGTTATCCCTTGTTACCAAGCGGAATGCAGA GAGTGCAAGTTTTGCAAGTCCGGGAAGACTAATCTTTGTGGCAAGGTCCGCGCAGCTACTGGTGTTGGGGTCATGATGACTGATCGCAAAAGCCGTTTTT CTGTGAATGGGAACCCGATATACCATTTCATGGGGACGTCTACTTTCAGCCAATATACTGTGGTTCATGATGTTAGTGTTGCGAAGATCGATCCAGCAGC TCCTCTTGACAAAGTATGCCTCCTTGGATGTGGTGTTCCCACTGGTCTTGGAGCTGTTTGGAACACAGCCAAAGTAGAAGCTGGATCAAATGTTGCCATT TTCGGCCTTGGTACTGTTGGCCTTGCAGTTGCTGAGGGTGCAAAAGCAGCTGGTGCTTCTCGCATCATTGGCATTGACATCGATAGTAAAAAGTTCGATA GAGGTATCAGTCTGGTTTCAAAATGCTGCATATGCTGGATTATTGCTATCATTTTCAGTGTTGATGCTGAACGGGGTTTAGTATTGCAAAATTACTTGCA TGACCATGAGCAATTGCACTGTGCAGCGAAGGATTTCGGAGTTACGGAATTCGTGAACCCCAACGAACATGAGAAACCAATCCAGCAAGTCCTCGTTGAT CTTACTGATGGTGGCGTAGACTATAGTTTTGAGTGCATTGGGAATGTTTCCGTAATGAGGGCTGCTTTGGAGTGCTGTCACAAGGGATGGGGTACTTCAG TCATCGTTGGAGTAGCAGCATCCGGTCAGGAGATATCGACTCGTCCATTCCAGTTGGTGACAGGCCGCGTCTGGAAGGGAACAGCTTTCGGTGGGTTCAA GAGTCGTTCCCAGGTGCCTTGGCTTGTCGAGAAGTACTTGAAAAAGGAGATCAAGGTCGACGAGTACATCACACATAGCCTGACATTGCCGGAGATCAAC AAGGCGTTTGATCTGATGCATGAAGGAGGTTGTCTGAGGGCCAAGTCATCACCTGCAAAGCTACAGTTCTGTCTCTGTATCTCGTTTCCTTCTGTTCTCC GATGCCGTTCGATTCCACTGATCCATTCTCTCCAGCGATTTGGCAATCGCGATGTGTTGCGACGGACAGCAGCGGTGTCGTGGGAACCTAACAAGCCGCT GGTGATCGAGGATGTTCAGGTAGCTCGCCTCAGGCTGGCGAGGTCCGCATCAAGATTCTCTTCACTGCTCTCTGCCACACTGATGCTTACACTTGGAGCG GCAAGGTACCTTTCAGTTAGTTGCTATTATCTTAAGCTAATTGCCTTCTACTTGTGGCCTGCTACTCCTGCTGCTGCTGTTGATTTCTGTTTGTCTCTTT TAAGTTGTTGA
AA sequence Show only first row Show all	>Lus10022853 pacid=23159999 polypeptide=Lus10022853 locus=Lus10022853.g ID=Lus10022853.BGIv1.0 annot-version=v1.0 MATQGKVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECR ECKFCKSGKTNLCGKVRAATGVGVMMTDRKSRFSVNGNPIYHFMGTSTFSQYTVVHDVSVAKIDPAAPLDKVCLLGCGVPTGLGAVWNTAKVEAGSNVAI FGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRGISLVSKCCICWIIAIIFSVDAERGLVLQNYLHDHEQLHCAAKDFGVTEFVNPNEHEKPIQQVLVD LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHSLTLPEIN KAFDLMHEGGCLRAKSSPAKLQFCLCISFPSVLRCRSIPLIHSLQRFGNRDVLRRTAAVSWEPNKPLVIEDVQVARLRLARSASRFSSLLSATLMLTLGA ARYLSVSCYYLKLIAFYLWPATPAAAVDFCLSLLSC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10022853 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	1.4	0.8411
AT2G32070			Polynucleotidyl transferase, r...		Lus10036291 [exp]	2.8	0.8209
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	8.1	0.8108
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	8.1	0.7881
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10029398 [exp]	11.0	0.7668
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Lus10007470 [exp]	15.9	0.7392
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	20.8	0.7686
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10024433 [exp]	21.5	0.7909
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	24.4	0.7732
AT4G14147		ARPC4	protein binding (.1.2)		Lus10027499 [exp]	25.8	0.7297

Compare expression of checked genes

Lus10022853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.