Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20320 781 / 0 DENN (AEX-3) domain-containing protein (.1) AT5G35560 287 / 2e-85 DENN (AEX-3) domain-containing protein (.1) AT1G49040 57 / 3e-08 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000499 [exp] 1357 / 0 AT2G20320 918 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10033443 [exp] 251 / 1e-71 AT5G35560 856 / 0.0 DENN (AEX-3) domain-containing protein (.1) Lus10017173 [exp] 211 / 5e-60 AT5G35560 456 / 2e-153 DENN (AEX-3) domain-containing protein (.1) Lus10040449 [exp] 56 / 2e-07 AT1G49040 1816 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Lus10023563 [exp] 55 / 3e-07 AT1G49040 1743 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255500 [exp] 891 / 0 AT2G20320 906 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.006G143000 [exp] 269 / 3e-78 AT5G35560 879 / 0.0 DENN (AEX-3) domain-containing protein (.1) Potri.018G065501 [exp] 100 / 2e-23 AT5G35560 0 / 1 DENN (AEX-3) domain-containing protein (.1) Potri.012G060800 [exp] 56 / 2e-07 AT1G49040 1782 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3) Potri.015G049500 [exp] 52 / 2e-06 AT1G49040 1810 / 0.0 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [flax] [poplar] AVL9 PF02141 [flax] [poplar] DENN DENN (AEX-3) domain CL0431 [flax] [poplar] PF PF03456 [flax] [poplar] uDENN uDENN domain
Representative CDS sequence Show only first row Show all	>Lus10022854 pacid=23160047 polypeptide=Lus10022854 locus=Lus10022854.g ID=Lus10022854.BGIv1.0 annot-version=v1.0 ATGGCATCTTTGCAACTGCAAGTGGATGAATTCGAATCACAGGAGGGAAGGAGACAAGAGGAAGCAATTAGAGTCGCCGTCGTCGCCGCCGCCGGGGAGA AAGCTCAGGGTGGTGAGCCGCAGTCGCCGGCGGCTTCACCGCAGCAGCACCGTCGGAGTCAGAGCGAAGTGTTGACCAAGGATGGGAAAAGGAGCAGCAG TTTCCAGAAGTTGATGCAGAAAGCTTGGCAATGGGGTGGTAATTCGAGAGAGCAAGGGTTTGTACCAAGCTTCAATCCTGAGGTTTTGGCTAACCAGAAA CGGCAGTGGTATCAGCTTCATCCTAAATCTACGGACCATATAAGTTACAAGGAGCCAACCTCGCTATATGAACACTTTGTTGTTACGGGACTCAGACCGG AGACTAATCTACATACTGTGGAGGAGGCATTTGCGAGGAGGAAGAAGTGGGAGTTGGTGGAAACGAGATCAGGAGCTAAGGACATTAAGGCGGTTCGGAA TCGAGCACCTGCATTTCCAACTATGGATCCTCAGCTGCTCTTTAAATATCCTCCTGGAAAGAAATTACCCATGCGCATGAAAGATTTGGGTGCTTTTTGT TTCCCTACCGGTGTTAAGCCGCGGTTGTTGGAGAGAACGCCCTCTCTCAGCGAGCTGAATGAACTTGTTTATGGACAGGGACATTTGGGGAGAGATGATT TGTCATTTGTCTTTTCGCTTAAGGTGGCAGACAACGACACATTATACGGTGTGTGCTTGCATACAACCGAGTTCGTCCAGAGACCACTTGGTATCTTAGG CTCCTCGTCACCTCTTTCTTCATCTAGACGCTGTGGCCGTTTTCTAGTTTCCGCGCCTCGTTGTTATTGTCTGCTAACAAGACTACCTTTCTTTGAGCTA CACTACGAGATGCTGAACAGCATTATTGCCCAGGAGCGTTTGAACAGGATAACACAGTTTCTCGGCGAAATATCATTTAATAGCTGCGTCCCTTCATTCG GTAGACAACCTTCTCAACTGAACGGGTACCAGGATCAGTTGGATGCCTCTGACTGGATGGCCTCGGCTATACCGGTTGAAAGTGCTATAGCACTTACTGC TGCTGCCGCAGGACTTGCGGTGGACGATGATTCTTCTTCACAAAGGACATCGGAACCTCATTCTCCCGAGAGTATTGCTGCTAGTGCTGCTAGCGAGACT TCCGATTTCAGTCAAACGAGGGAGAGTGACAAGGATGGCAGTAAAAGTTTGAACTCCTTTGATGATGGTTATTCAGACTCTTCAGAAGCCCGTTCGGATG CTTTCGACCGACTATATGGAAGCTACGACAATGGTCATGCTTCTCCGGATGTTGGGCTCTATTCTTGCGCGAGGAGTCCTGAGCTGGAGCGTATTCCAAG TTTTGATGCACTTTTCAGTCCAGTAAGAAGCATGACATCCGAGGACGACGAAGATGATGAAATGTTTGCCAACCATAGCAAAGATTTCGAGAATGATGTA ATAGTGGAGTGGGCAAAGGAGAACAAGAACGATTTGTTGCTGATAATTTGTAGTTATCATGCTATGGCTATCCCCGATCGAGGAGGGAAGTTAGTTTTCC AGCCTCTCGATCATTTACCTGCTGTGGAGTATAATCGACCTCATGTCTCGTCGCTTGCCTTTTCTCGAAGCTTTGTAGATGCATTTAATGCTGTTGAGAT TTTGACTCTGGTTGCGGCAGTTTTGCTTGAGAAACAAGTAATAGTAATGTGCCCAAACTTGGGTGTTCTTTCTGCTGTGGTATTGTCTCTGATTCCGTTG ATTCGTCCATTTCAATGGCAAAGTTTATTCCTTCCTGTTTTGCCAGATAAGATGTACGATTTTCTTGATGCTCCAGTTCCTTTTATTGCTGGAATACAAG TTAAACCTGGTGAAGTGAGGATAAAAACATACAACCTCGTCATCGTTAATGTGCTCAGCGACCAGGTGAAATCATGTCAATTGCCTACTCTTCCTAAATA CAAAGAGCTCTTCTCGGAACTCCGGCCAGTTCATGCTAAACTATCACAACAAAACACAACAGGAAACAAGAATCCAGTGTATAGGTGCAACGAAGTGCAG GCTGATGCAGCAAACCACTTCTTGAGAGTCATAAGGCGCTACTTGGAATCCATGTGGGCAGATTCGAGGTCACATACGATAACTAGCGTACAGTCTAACC ATGACAGGGTTTGTTTACTTCTTAAAGATAGTTTTATCGATTCCTTCCCTTACAAGGAACGACCATTCATTAAGCTGCTAGTAGATACACAACTGTTTGC TTCTCTATCGGACAGCCGATTGACAACCTTTGAGAGTGGGAGGTTTTAG
AA sequence Show only first row Show all	>Lus10022854 pacid=23160047 polypeptide=Lus10022854 locus=Lus10022854.g ID=Lus10022854.BGIv1.0 annot-version=v1.0 MASLQLQVDEFESQEGRRQEEAIRVAVVAAAGEKAQGGEPQSPAASPQQHRRSQSEVLTKDGKRSSSFQKLMQKAWQWGGNSREQGFVPSFNPEVLANQK RQWYQLHPKSTDHISYKEPTSLYEHFVVTGLRPETNLHTVEEAFARRKKWELVETRSGAKDIKAVRNRAPAFPTMDPQLLFKYPPGKKLPMRMKDLGAFC FPTGVKPRLLERTPSLSELNELVYGQGHLGRDDLSFVFSLKVADNDTLYGVCLHTTEFVQRPLGILGSSSPLSSSRRCGRFLVSAPRCYCLLTRLPFFEL HYEMLNSIIAQERLNRITQFLGEISFNSCVPSFGRQPSQLNGYQDQLDASDWMASAIPVESAIALTAAAAGLAVDDDSSSQRTSEPHSPESIAASAASET SDFSQTRESDKDGSKSLNSFDDGYSDSSEARSDAFDRLYGSYDNGHASPDVGLYSCARSPELERIPSFDALFSPVRSMTSEDDEDDEMFANHSKDFENDV IVEWAKENKNDLLLIICSYHAMAIPDRGGKLVFQPLDHLPAVEYNRPHVSSLAFSRSFVDAFNAVEILTLVAAVLLEKQVIVMCPNLGVLSAVVLSLIPL IRPFQWQSLFLPVLPDKMYDFLDAPVPFIAGIQVKPGEVRIKTYNLVIVNVLSDQVKSCQLPTLPKYKELFSELRPVHAKLSQQNTTGNKNPVYRCNEVQ ADAANHFLRVIRRYLESMWADSRSHTITSVQSNHDRVCLLLKDSFIDSFPYKERPFIKLLVDTQLFASLSDSRLTTFESGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20320			DENN (AEX-3) domain-containing...		Lus10022854 [exp]	0	1
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	6.3	0.7744
AT1G29750		RKF1	receptor-like kinase in flower...		Lus10015239 [exp]	9.5	0.7460
					Lus10032730 [exp]	22.3	0.6861
AT2G44280			Major facilitator superfamily ...		Lus10019162 [exp]	95.3	0.6979
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	96.3	0.7056
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	100.2	0.6931
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	115.0	0.7057
AT5G45300	BZR	BAM8, BMY2	BETA-AMYLASE 8, beta-amylase 2...		Lus10035679 [exp]	120.2	0.6936
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	129.5	0.6856
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	167.0	0.6995

Compare expression of checked genes

Lus10022854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.