Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20330 847 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 77 / 5e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 69 / 9e-12 TAF5 TBP-associated factor 5 (.1) AT1G73720 62 / 8e-10 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT4G02730 59 / 5e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 58 / 9e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 57 / 2e-08 WD-40 repeat family protein / notchless protein, putative (.1) AT5G58230 56 / 6e-08 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 56 / 7e-08 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G29260 54 / 2e-07 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024967 [exp] 1171 / 0 AT2G20330 871 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 72 / 7e-13 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10039636 [exp] 69 / 2e-12 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007449 [exp] 69 / 6e-12 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10012230 [exp] 65 / 6e-11 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 64 / 8e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10023381 [exp] 64 / 2e-10 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10038425 [exp] 64 / 2e-10 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 64 / 2e-10 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G193500 [exp] 938 / 0 AT2G20330 853 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 76 / 7e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 71 / 7e-13 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 71 / 1e-12 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.011G156900 [exp] 67 / 2e-11 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.014G016100 [exp] 62 / 6e-10 AT1G27840 660 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.007G050100 [exp] 62 / 1e-09 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G148500 [exp] 60 / 2e-09 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 59 / 6e-09 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 58 / 8e-09 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10022855 pacid=23159966 polypeptide=Lus10022855 locus=Lus10022855.g ID=Lus10022855.BGIv1.0 annot-version=v1.0 ATGGAGGACGAAGCAGAAATCTACGACGGAGTTCGAGCTCAGTTCCCTCTCTCCTTTGGAAAACAGTCCAAATCACAGACCCCTCTCGAGCAAATCCACA ACGCTACTCGCCGTTCCGCAACCGCCGCTGCTACCCAGTCCTCCGAAGGCGTTGAGAATCCTTCTGACGGATTTCCATCTCTTTCGGCGTCTTCCAAATC CTCGCTGGACTCGGTGCGCTCCTTGTCCAATCCCCATCCCGGTTCTTCTTCTTCTCCTAACTCTAAAATAGGACCTGAGCGGCCACCGAAATTGCGGGAG GATCGTGATGAGGATGACCATGATCAAAATGTTCATATTGGACCTCCGCGGCCTCCGCCTGGTCTAATTGAAGATGACGATGATGATGGCGAAGCTATGG TTGGACCGCCAAGGCCGCCGTCGGGGGCTGTCGTTGATAGTGACGATGATGACGACGGCGAGATGGTAGGACCGCCGAGGCCGCCGGCGCCGGTGACTGA CTCTGATGATGATGATGACGAAGAGGAAGAAGAAGAGGAGAATCGGCATCGAATTCCTACGACCAATGAAATTGTTCTCAAGGGTCATACTAAGATTGTT TCAGCCCTGGCAATTGATAATTCCGGCTCTAGAGTTCTCTCAGGCAGCTATGACTACAACGTCCGCATGTACGACTTTGGAGGGATGAACTCTACTTTGC AGTCATTTCGGCATCTAGAACCATCTGAAGGTCATCAAGTTCGTCACTTGAGTTGGAGTCCTACTGCTGACAAGTTTTTGTGTGTGACAGGCTCTGCTCA AGCTAAGATATTTGACCGTGATGGACTTACTCTAGGCGAGTTTGTAAAAGGGGACATGTACATTCGAGATTTGAAGAACACTAAGGGCCATATTACGGGG TTGACATGTGGAGAGTGGAATCCCAAAGCCAAAGAGAAGATTTTGACATCATCAGAGGATGGGTCATTGCGTATATGGGATGTAAATGATTTCAAAAGTC AGAAGCAGGTGATCAAGCCAAAGCTTGCTAGACCTGGAAGGGTTCCAGTTACGACATGCACTTGGGATCGTGAAGGGAAGTGCATTGCTGGTGGAGTTGG AGATGGTTCTATTCAGTTATGGACCCTTAAGCCTGGATGGGGAAGCAGACCAGATGTACATGTAGAGGAAGCTCATTCTGATGAGATCACTGGGCTTAAA TTCTCTAGTGATGGTCGGATTCTACTCTCGAGAAGTTTTGATGGTTCATTGAAGGTCTGGGATATGCGCAAAATGAAGGAGGCTCTTAAAGAATTTGAGG ATCTTCCTAATCATTATTCACAGACAAATATTGCCTTAAGCCCTGACGAGCAACTGATCGTGACTGGAACATCCGTTGAAAGGGAGAGCACAACTGGAGG ATTATTGTGCATTTTCGATCGGTCAAAACTTGAACTTATTTCGAAAATTGGCATTTCCCCAACTTGCAGCGTTGTGCAATGTGCTTGGCACCCTAAACTA AATCAGATATTTGCAACTACTGGAGATAAATCCCAAGGTGAAACTCACATTCTCTACGATCCAACCTTGAGCGAGAGAGGAGCTCTACTCTGTGTTGCCC GCGCTCCAAGGAAACAGTCCATCGACGATTTTGCAATTCAGCCTGTTATCCACAATCCTCATGCGCTGCCCTTGTTTAGAGATGCACCGAGTCGCAAGCG TCAGCGCGAGAAGATGCTGAATGATCCACTCAAGTCTCATAAGCCTGAAGTTCCGATGAGTGGGCCAGGACACGGTGGGAGAATCGGTACAAGTAAAGGA AGCCTGCTCACTCAGTATCTTATGAAGCAAGGTGGGATGCTCAAGGAGACATGGATGGAGGAAGATCCCAGAGAAGCTATTCTCAAGTACGCTGATGTTG CAGCTAAAGATCCCAAGTTCATAGCTCCAGCATATGCAGATACCCAGCCTGAAACAGTCTTTGCCAAGTCCGATTCTGAAGATGACGAGAAATGA
AA sequence Show only first row Show all	>Lus10022855 pacid=23159966 polypeptide=Lus10022855 locus=Lus10022855.g ID=Lus10022855.BGIv1.0 annot-version=v1.0 MEDEAEIYDGVRAQFPLSFGKQSKSQTPLEQIHNATRRSATAAATQSSEGVENPSDGFPSLSASSKSSLDSVRSLSNPHPGSSSSPNSKIGPERPPKLRE DRDEDDHDQNVHIGPPRPPPGLIEDDDDDGEAMVGPPRPPSGAVVDSDDDDDGEMVGPPRPPAPVTDSDDDDDEEEEEEENRHRIPTTNEIVLKGHTKIV SALAIDNSGSRVLSGSYDYNVRMYDFGGMNSTLQSFRHLEPSEGHQVRHLSWSPTADKFLCVTGSAQAKIFDRDGLTLGEFVKGDMYIRDLKNTKGHITG LTCGEWNPKAKEKILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCTWDREGKCIAGGVGDGSIQLWTLKPGWGSRPDVHVEEAHSDEITGLK FSSDGRILLSRSFDGSLKVWDMRKMKEALKEFEDLPNHYSQTNIALSPDEQLIVTGTSVERESTTGGLLCIFDRSKLELISKIGISPTCSVVQCAWHPKL NQIFATTGDKSQGETHILYDPTLSERGALLCVARAPRKQSIDDFAIQPVIHNPHALPLFRDAPSRKRQREKMLNDPLKSHKPEVPMSGPGHGGRIGTSKG SLLTQYLMKQGGMLKETWMEEDPREAILKYADVAAKDPKFIAPAYADTQPETVFAKSDSEDDEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	2.6	0.8102
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	3.5	0.7783
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	3.7	0.8000
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	7.1	0.7362
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10042184 [exp]	12.0	0.7229
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10029414 [exp]	15.7	0.7471
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	16.6	0.7606
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	21.9	0.6900
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	22.4	0.7185
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	26.3	0.7203

Compare expression of checked genes

Lus10022855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.