Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20340 794 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 702 / 0 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4) AT1G43710 44 / 0.0003 EMB1075 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024966 [exp] 879 / 0 AT2G20340 706 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018522 [exp] 587 / 0 AT2G20340 569 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039740 [exp] 574 / 0 AT2G20340 568 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10012601 [exp] 98 / 3e-24 AT2G20340 100 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10011345 [exp] 47 / 4e-05 AT1G27980 794 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10003129 [exp] 45 / 0.0001 AT1G27980 781 / 0.0 dihydrosphingosine phosphate lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255600 [exp] 839 / 0 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052900 [exp] 587 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G114300 [exp] 583 / 0 AT2G20340 552 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052800 [exp] 581 / 0 AT2G20340 553 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G036200 [exp] 578 / 0 AT2G20340 596 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G168800 [exp] 44 / 0.0002 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1) Potri.002G069800 [exp] 42 / 0.0007 AT1G43710 790 / 0.0 embryo defective 1075, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10022856 pacid=23159911 polypeptide=Lus10022856 locus=Lus10022856.g ID=Lus10022856.BGIv1.0 annot-version=v1.0 ATGGACGCAGAGCAACTGAGACAGAATGCACACCAAATGGTTGATTTCATTGCCGACTACTACAAGAACATTGAGACTTACCCTGTTCTCAGCCAAGTTG AGCCTGGTTATTTGAAGAAGCTACTGCCTGATTCTGCACCAAATAGACCTGAATCTTTGCAAAGTGTTCTTGATGATGTGCAGTCGAAGATAATGCCTGG AGTGACTCATTGGCAAAGTCCCAACTACTTCGCTTATTATCCTTCCAACAGTAGTGTTGCAGGATTCTTGGGAGAAATGCTTAGTGCTGGGATTAGCATG GTTGGTTTCAGCTGGATAACTTCTCCTGCTGCCACTGAACTCGAAATGATTGTGCTAGATTGGCTCGCCAAGCTGCTTAAACTGCCCAAGGAGTTCCTCT CATCAGGACATGGCGGTGGAGTGATACAAGGAACTGCAAGTGAAGCTATTCTGGTTGTACTATTGGCTGCTCGTGATAAGATGTTGAGGAAGTTCGGGAA AAGCACCCTTGAAAAGCTTGTTGTTTATGCATCTGATCAAACACATTCCGCACTGCAGAAAGCCTGCCAGATAGGTGGGATATATCCGGAAAATTGTCGG CTGCTGAAAACAGACTCCTCAGCAAATTATTCCCTTACTCCGGAATTAGTTAGGGAAGCAGTTTCACAGGACATTTCTGCTGGATTGATTCCCTTCTTTC TATGTGGAACTGTTGGCACGACTTCGTCAGCAACTGTTGATCCCTTGGGTACACTGGGGAAGATCGCCAAGAATAACGACATGTGGTTCCATGTGGATGC TGCATACGCTGGAAGTGCTTGCATATGTCCTGAATACCGCCAGTACCTTGATGGTGTCGAAGAAGCAGACTCTTTCAACATGAACGCGCACAAATGGTTC TTAACAAACTTCGACTGCTCAACCCTTTGGGTCAAGGACAAAAGTGCTCTTATCCAGGCCCTCTCCACGAATCCAGAATTTCTAAAGAACAAGGCCTCAC AAGCAAACTTGGTGGTGGATTATAAAGACTGGCAAATTCCTCTTGGACGTCGGTTTAGGTCATTAAAGCTATGGATGGTACTACGACTATACGGTGTGGA GAATCTTCAGCAATACCTCAGAAACCATATCGAGTTGGCGCGGCATTTTGAAGAGTGTGTTAACCAAGATCCGAGATTTGAGGTTCTCGCCCCTCGCTTA TTTGCACTGGTATGCTTTCGACTCATACCTCCTGAAAATGACGAAGTTCGTGGCAATAAACTGAACCGGGAGCTGCTGGAAGCTGTGAACTCGACGGGAA AAGTGTTCATGTCCCACACGGCTCTATCGGGGAAGTACACGTTGCGAGTTGCGATAGGGGCACCATTGACAGAGAAGAGACATGTAGCTGCAGCTTGGAA AGTGCTACAAGATGAGGCAACTTCTTTGCTGGTGGGCACTTCTCCACTGCTTGAAAACGGAAACTCATCGTAG
AA sequence Show only first row Show all	>Lus10022856 pacid=23159911 polypeptide=Lus10022856 locus=Lus10022856.g ID=Lus10022856.BGIv1.0 annot-version=v1.0 MDAEQLRQNAHQMVDFIADYYKNIETYPVLSQVEPGYLKKLLPDSAPNRPESLQSVLDDVQSKIMPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGISM VGFSWITSPAATELEMIVLDWLAKLLKLPKEFLSSGHGGGVIQGTASEAILVVLLAARDKMLRKFGKSTLEKLVVYASDQTHSALQKACQIGGIYPENCR LLKTDSSANYSLTPELVREAVSQDISAGLIPFFLCGTVGTTSSATVDPLGTLGKIAKNNDMWFHVDAAYAGSACICPEYRQYLDGVEEADSFNMNAHKWF LTNFDCSTLWVKDKSALIQALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQQYLRNHIELARHFEECVNQDPRFEVLAPRL FALVCFRLIPPENDEVRGNKLNRELLEAVNSTGKVFMSHTALSGKYTLRVAIGAPLTEKRHVAAAWKVLQDEATSLLVGTSPLLENGNSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10022856 [exp]	0	1
AT3G05350			Metallopeptidase M24 family pr...		Lus10004479 [exp]	9.7	0.7501
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	14.4	0.7375
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Lus10015839 [exp]	14.7	0.7072
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	17.2	0.7448
AT2G03390			uvrB/uvrC motif-containing pro...		Lus10037120 [exp]	19.4	0.7351
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	21.4	0.7365
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10022429 [exp]	23.9	0.7349
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10005133 [exp]	24.9	0.6968
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002641 [exp]	27.3	0.6656
AT1G28540			unknown protein		Lus10042196 [exp]	29.1	0.7019

Compare expression of checked genes

Lus10022856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.