Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000999 [exp] 111 / 4e-32 ND / Lus10001000 [exp] 110 / 9e-32 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022857 pacid=23159992 polypeptide=Lus10022857 locus=Lus10022857.g ID=Lus10022857.BGIv1.0 annot-version=v1.0 ATGGCCGGGGCTAAACAAATTATTACAACAACCCTAGTCACGATCCTCCTCATTAATCTTCTACCGGCAACTGCATCAGAAGGAATACTCTCCTACGTGT TTCCAATTGTGAACGTGACGTTCACAAACGAGGCCACTCACGATGTCCTAATCATGTGCAACAAAGACGGGTTCCGCGAGCTAAGTACATTGTCACCGGG AGAGGTTCGACACTGGTCAATTCGCGACGTGGCGTTCCCGTTGGTGTGGTGCTATTTGCACGTGGACGACTCAATACAAGGTATGTTTTGGGGGTTCCTT TCGAGATACAGTTGTGGCAGACACTGCGATTGGCGGATCAAAGATTACGGGTTAATGATGCGTCGGAAAAGTGGTGAGGAGACGTATCGTTGGATGCATA CGGCGGGAGAATTCTTCTAG
AA sequence Show only first row Show all	>Lus10022857 pacid=23159992 polypeptide=Lus10022857 locus=Lus10022857.g ID=Lus10022857.BGIv1.0 annot-version=v1.0 MAGAKQIITTTLVTILLINLLPATASEGILSYVFPIVNVTFTNEATHDVLIMCNKDGFRELSTLSPGEVRHWSIRDVAFPLVWCYLHVDDSIQGMFWGFL SRYSCGRHCDWRIKDYGLMMRRKSGEETYRWMHTAGEFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022857 [exp]	0	1
AT3G14040			Pectin lyase-like superfamily ...		Lus10038316 [exp]	1.0	0.8321
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	9.1	0.7963
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	11.1	0.7963
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	12.8	0.7963
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	13.4	0.7958
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	15.7	0.7937
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Lus10041789 [exp]	16.8	0.6053
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	16.9	0.7936
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	18.1	0.7926
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	19.2	0.7911

Compare expression of checked genes

Lus10022857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.