Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20360 552 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024964 [exp] 786 / 0 AT2G20360 580 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255900 [exp] 644 / 0 AT2G20360 598 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G193300 [exp] 624 / 0 AT2G20360 570 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10022859 pacid=23159970 polypeptide=Lus10022859 locus=Lus10022859.g ID=Lus10022859.BGIv1.0 annot-version=v1.0 ATGCAGGCGATCTCGAGGCGATTAGGGCACCAATACTTGAAGCCCGGGGCTTCAATCTCCTCTCTCAAATCGATCTACCCACTCTCTGATCACTATTATG GAGTTGAGAACCCGCGTTACGTGTCCACCATCACGCCCAAGGGCGTCGGCCACCTTGTTAGGAAAGGTACTGGAGGGAGATCGTCCGTCAGTGGAATCGT TGCGGCAGTCTTTGGAGCTACGGGTTTCTTAGGTCGTTATGTTGTGCAGCAACTTGCTAAAATGGGATCTCAGGTTTTAGTCCCCTTTCGTGGATGTGAA GATGACAACAGGCACCTTAAGTTGATGGGAGATTTGGGTCAGGTAGTACCCATGCAATTCAACCCAAGGGATGAGGCTTCCATTAAGGCTGTAATGGCCA AGGCTAATGTTGTCATTAATCTTATCGGAAGGGAATACGAAACACGGAATTACAGCTTTGAAGAAGTGAACCATGGCATGGCTGAAAAGTTCGCAACGGT TGGTTCTATCATTCCTCTTAAACGGGCATTTGTTCTCATTTGGTTGAATCTGATTGCAAAAGAACATGGAGGTATCATGAGGTTCATTCAGGTGTCTTGT TTGGGAGCTTCATCGTCGTCTCCTTCAAGATATCTGAAGGCTAAGGCAGCTGCAGAAGAAGCTGTCCTAAGAGAGCTACCTGAGGCGACAGTTTTGAGGC CTGCTACAATGATTGGTACAGAGGATCGTATGTTGAACACATGGGCTCACTTCGCCAAGAAGTATTCATTTGTTCCGTTCTTTGGAGATGGATCCGTCAA GTTTCAACCTGTATATGTCATTGATGTTGCTGGTGCGGTCGTCGCAGCTTTGAAAGATGATGGGTCCAGTATGGGAAAAGTTTATGAGCTTGGTGGGCCA GAAATCTTCACCATGCATGAACTGGCGGAGCTCATGTTTGAGACAATCCGTGAATATCCTCGCTATGTGAAAATCCCGCTGCCTATTGCAAAGGCTGTTG CTTCACCGAGAGAGATCCTCCTTAATAAGGTTCCATTTCCCTTGCCTACACCAAGTGTCTTCAACCTCGATAAGATCAAGGCAGTTTCATCAGATACGCT AGTTTCCGACAACGCTTTAACATTCCATGATCTTGGGATTGAGCCACATAAACTAAGGGGATATCCTATCGAGTTCCTCTTGTCATACCGTAAGGGTGGC CCGCAATTTGGCTCTACAGTCAGTGAAGGAATCTCCCCGGACAGGTTTCAATAG
AA sequence Show only first row Show all	>Lus10022859 pacid=23159970 polypeptide=Lus10022859 locus=Lus10022859.g ID=Lus10022859.BGIv1.0 annot-version=v1.0 MQAISRRLGHQYLKPGASISSLKSIYPLSDHYYGVENPRYVSTITPKGVGHLVRKGTGGRSSVSGIVAAVFGATGFLGRYVVQQLAKMGSQVLVPFRGCE DDNRHLKLMGDLGQVVPMQFNPRDEASIKAVMAKANVVINLIGREYETRNYSFEEVNHGMAEKFATVGSIIPLKRAFVLIWLNLIAKEHGGIMRFIQVSC LGASSSSPSRYLKAKAAAEEAVLRELPEATVLRPATMIGTEDRMLNTWAHFAKKYSFVPFFGDGSVKFQPVYVIDVAGAVVAALKDDGSSMGKVYELGGP EIFTMHELAELMFETIREYPRYVKIPLPIAKAVASPREILLNKVPFPLPTPSVFNLDKIKAVSSDTLVSDNALTFHDLGIEPHKLRGYPIEFLLSYRKGG PQFGSTVSEGISPDRFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10022859 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031186 [exp]	7.3	0.9123
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10015806 [exp]	11.6	0.9054
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	12.6	0.9004
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	12.7	0.8744
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	14.4	0.8810
AT3G26780		MEF14	mitochondrial editing factor 1...		Lus10031987 [exp]	17.9	0.8551
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	19.8	0.8747
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10041472 [exp]	19.8	0.8700
AT5G54900		ATRBP45A	RNA-binding protein 45A (.1)		Lus10032645 [exp]	21.7	0.8502
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	21.9	0.8784

Compare expression of checked genes

Lus10022859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.