Plant FIBer expression Database

Lus10022860 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20362 49 / 2e-07 unknown protein
AT1G63310 41 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024963
[exp]
183 / 2e-58 AT2G20362 51 / 1e-08 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G256100
[exp]
49 / 2e-07 AT2G20362 62 / 3e-13 unknown protein
PFAM info
Representative CDS sequence
>Lus10022860 pacid=23160057 polypeptide=Lus10022860 locus=Lus10022860.g ID=Lus10022860.BGIv1.0 annot-version=v1.0
ATGGGATCAGAAACCTGCGAGAACGATTACTTCCACGAATTCAACCTTGAAGGAAACAACTATGGTGCCACAATGACCACTCGGCTCGGGGATCCATCTG
TTAGTCCCCGAGAAGGCATATGCATCAACATATACGTGAACAACAATGTCCAAGGGGTGAACAACTCCATGGTGATGGAGAGCAAAGTCAAGATGACGAA
TTCCGGCGTTGCCATCTACCTAGATGGCCTCAGACTTGACAAAAGAATGAAACAGAAGAAGGCACCACGTCGATTGTCAAAGAGGAAACACAATAAATCG
GGAGAAACGATGATTTCAAGATCAGATTCTAAACTAGGGGAAGAAGTAGAGGTTTCCAGATCAGATTCGCAGTTAGGGTTTGCTGCGCTCCCTAGCCTAT
CGAACATGGTCTCGTCTGAGACCCTCATTTCCCAAGTTGAAGACTCTAGGATTCTGCAGCTTGATCCCGATGGTGACGCATCGCAAATCCAATACATAGA
ACTTCCGGAGTTTTCCGCCAGTCCATGTTCTGATCAATGTGCTAGGCTGTGTTCAAAGGTACAGATCATGCCCGGAACTTGCAATGGCATATTATTGTTG
GGATATGTAGAGAATCCTCTCAAATCTACAGGATATCATCCATGTCATTGTGGTGTATTGGCGCTATGGAATCCGGCGACCGGCTCGCTTAAGGAACTGC
CAGCTGTTCCACCTCCAACCAGGCCCAGGATCCTGCCTCCTAATGCAGAACTTTCTTCACGGCCATGGAATGCTATTATGAATTGA
AA sequence
>Lus10022860 pacid=23160057 polypeptide=Lus10022860 locus=Lus10022860.g ID=Lus10022860.BGIv1.0 annot-version=v1.0
MGSETCENDYFHEFNLEGNNYGATMTTRLGDPSVSPREGICINIYVNNNVQGVNNSMVMESKVKMTNSGVAIYLDGLRLDKRMKQKKAPRRLSKRKHNKS
GETMISRSDSKLGEEVEVSRSDSQLGFAALPSLSNMVSSETLISQVEDSRILQLDPDGDASQIQYIELPEFSASPCSDQCARLCSKVQIMPGTCNGILLL
GYVENPLKSTGYHPCHCGVLALWNPATGSLKELPAVPPPTRPRILPPNAELSSRPWNAIMN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20362 unknown protein Lus10022860
[exp]
0 1
AT2G27140 HSP20-like chaperones superfam... Lus10003356
[exp]
4.2 0.9336
AT2G42820 HVA22F HVA22-like protein F (.1) Lus10031386
[exp]
5.3 0.9320
AT3G18260 Reticulon family protein (.1) Lus10032451
[exp]
8.1 0.9316
AT1G13920 Remorin family protein (.1) Lus10037111
[exp]
9.2 0.9289
AT1G76770 HSP20-like chaperones superfam... Lus10028577
[exp]
10.8 0.9292
AT5G40100 Disease resistance protein (TI... Lus10000329
[exp]
11.8 0.9067
AT1G75260 oxidoreductases, acting on NAD... Lus10001963
[exp]
11.8 0.9220
AT5G42930 alpha/beta-Hydrolases superfam... Lus10005092
[exp]
14.4 0.8830
Lus10016944
[exp]
14.7 0.9237
AT2G20362 unknown protein Lus10024963
[exp]
16.2 0.9185

Lus10022860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.