Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20370 922 / 0 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 545 / 0 Exostosin family protein (.1) AT4G13990 487 / 3e-167 Exostosin family protein (.1) AT2G32750 463 / 4e-158 Exostosin family protein (.1) AT2G32740 416 / 4e-140 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 411 / 4e-138 Exostosin family protein (.1) AT1G68470 342 / 1e-111 Exostosin family protein (.1) AT5G62220 339 / 1e-109 ATGT18 glycosyltransferase 18 (.1) AT1G63450 339 / 7e-108 RHS8 root hair specific 8 (.1) AT5G41250 329 / 3e-105 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024961 [exp] 1125 / 0 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 538 / 0 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 530 / 0 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 526 / 0 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 485 / 4e-166 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 474 / 2e-162 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10010677 [exp] 452 / 5e-154 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 447 / 6e-152 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10007037 [exp] 435 / 1e-147 AT4G13990 540 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256200 [exp] 963 / 0 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.009G032500 [exp] 541 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 527 / 0 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 517 / 1e-178 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 354 / 6e-116 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 350 / 3e-114 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 340 / 3e-109 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 324 / 6e-104 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 313 / 2e-99 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 272 / 7e-85 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10022862 pacid=23160065 polypeptide=Lus10022862 locus=Lus10022862.g ID=Lus10022862.BGIv1.0 annot-version=v1.0 ATGGGCGATTTGAAGTTCCTAACAAGACGCACAACAAGACCTGCAACCACCGACGACGTTCTGGAACAGATGGAGAAAGGAAATGGGAAAAACCAGCAGA ATCGAGTTTGTCTGTTAGCTTCCCTCTCTGCTTTCTTTTGGATTCTCTTACTTTACTTCCATTTCGTCGTCTTGTCCGGCCGCACATTCTCCGATCAGTC ACTCACCCTAAAGTCCAACCCTCCGGCGGTGGCCGATTTCAGAACCTCCTTCCCAAATCCGCTCCCTAAAAAAGAGGTTGAAGAATCTGAATCAGAATCC CCTCCTATCCCTAAATATGAAGAAAAATCCCTTCCAATCCCTGAAGTCACTGATGAAGAACCCCCCAAGAGTTTCACATTCACGAGAGCTCTTAGCACGG TAGAGAACAAGACTGATAAGTGCGGCGGGAGGGATGTCTATGTTCATGATTTGCCATCTAGGTTCAACGATGATATGTTGAAAGAGTGCAGGAGTTTGAG CTTGTGGACAAACATGTGTAAGTTCACTACCAATGCTGGTATGGGACCGCCGTTGGAGAATGTCGAAGGCGTGTTTTCGAACACTGGATGGTATGCCACC AACCAGTTTGCCGTGGATGTGATCTTTAACAACAGGATGAAACAGTATGATTGTTTGACGAATGATTCGTCCTTAGCTGCTGCGATCTTTGTCCCGTTTT ATGCTGGTTTTGACATTGCGAGGTACCTTTGGGGCCATCCGATTTCGAGGCGAGATGCTGCTTCTCTTGATCTTGTGGAGTGGCTGATGAAGAGACCCGA GTGGGAGATCATGCAAGGGAGGGATCATTTCTTGGTTGCAGGGAGGATCACTTGGGATTTCAGGAGATTGTCTGAGGAAGAAGGTGATTGGGGGAATAAG CTTCTGTTCCTGCCTGCTGCGAAAAACATGTCGATGCTTGTCGTTGAATCGAGCCCATGGAATGCTAACGATTTCGGGATCCCGTATCCGACTTATTTCC ATCCCGCCAAGGATGCTGATGTGTTTGCTTGGCAAGAAAGGATGAGAAACTTGGAGAGGAAATATTTGTTCTCTTTCGCTGGGGCGCCTCGTCCTGGTAA TTCGAAATCGATCAGAGGCCAGATCATAGACCAGTGTAGGAGTTCGAAAGTCGGGAAGCTGTTGGAATGCGATTTTGGAGAGAGCAAATGTCATTCTCCC AGCAGCATAATGCAGATGTTCCAGAGCTCCCTTTTCTGCTTGCAACCTCAGGGGGATTCATACACTCGAAGGTCGGCTTTCGATTCGATGCTGGCCGGGT GCATTCCCGTGTTCTTCCATCCTGGTTCTGCTTACACGCAGTATACATGGCATCTTCCGAAGAACTACACGACTTACTCTGTGTTCATTCCCGAGGACGA TATCCGGAAGAGGAATCTTAGCATTGAGGAGAGGCTGAGCCAGATTCCTCCCGAGCAGGTCCGGATTATGAGGGAGAATGTGATCAAGCTCATCCCTCAG CTTATCTACGCAGACCCTCGTTCGAAGCTGGAGACTTTTAAAGATGCGTTCGATGTGGCTGTCCAAGCCGTGATAGACAAGGTGACGAGGCTGAGGAAGA ACATGATCGAAGGGCGGACTGAGTACAACAACTTCGTCGAGGAGAACAGTTGGAAGTATGCGTTGCTGGAAGAAGGCCAGCGCGAGGTCGGAGGCCACGA GTGGGATCCATTCTTCTCGAAACCGAAACCTAACGATGGTGGAGGTGGTACTGGCGGGGAATCGTCTACTGGTTCAGAAGCAGAAGCTGCGAAGAATTCG TGGAAGAACGAGCAAAGAGATCAGAAATGA
AA sequence Show only first row Show all	>Lus10022862 pacid=23160065 polypeptide=Lus10022862 locus=Lus10022862.g ID=Lus10022862.BGIv1.0 annot-version=v1.0 MGDLKFLTRRTTRPATTDDVLEQMEKGNGKNQQNRVCLLASLSAFFWILLLYFHFVVLSGRTFSDQSLTLKSNPPAVADFRTSFPNPLPKKEVEESESES PPIPKYEEKSLPIPEVTDEEPPKSFTFTRALSTVENKTDKCGGRDVYVHDLPSRFNDDMLKECRSLSLWTNMCKFTTNAGMGPPLENVEGVFSNTGWYAT NQFAVDVIFNNRMKQYDCLTNDSSLAAAIFVPFYAGFDIARYLWGHPISRRDAASLDLVEWLMKRPEWEIMQGRDHFLVAGRITWDFRRLSEEEGDWGNK LLFLPAAKNMSMLVVESSPWNANDFGIPYPTYFHPAKDADVFAWQERMRNLERKYLFSFAGAPRPGNSKSIRGQIIDQCRSSKVGKLLECDFGESKCHSP SSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTTYSVFIPEDDIRKRNLSIEERLSQIPPEQVRIMRENVIKLIPQ LIYADPRSKLETFKDAFDVAVQAVIDKVTRLRKNMIEGRTEYNNFVEENSWKYALLEEGQREVGGHEWDPFFSKPKPNDGGGGTGGESSTGSEAEAAKNS WKNEQRDQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10022862 [exp]	0	1
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	1.0	0.9370
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	5.7	0.9181
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	6.8	0.8562
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	7.7	0.9007
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10031695 [exp]	8.0	0.8611
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10020003 [exp]	8.1	0.8656
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	8.1	0.8658
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	8.8	0.9015
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10014495 [exp]	10.7	0.8849
AT1G75140			unknown protein		Lus10007163 [exp]	16.4	0.8397

Compare expression of checked genes

Lus10022862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.