Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20480 146 / 2e-39 EFR EF-TU receptor (.1) AT3G47090 144 / 1e-38 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 137 / 3e-36 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 133 / 6e-35 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 131 / 3e-34 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 128 / 3e-33 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G06940 120 / 2e-30 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 118 / 8e-30 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G36180 118 / 9e-30 Leucine-rich receptor-like protein kinase family protein (.1) AT1G71400 115 / 6e-29 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030587 [exp] 317 / 6e-101 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014500 [exp] 303 / 5e-96 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10016896 [exp] 295 / 3e-93 AT3G47570 714 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 295 / 5e-93 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 295 / 8e-93 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 292 / 9e-92 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 288 / 3e-90 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 284 / 1e-88 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 284 / 1e-88 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228300 [exp] 214 / 3e-63 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 205 / 5e-60 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 203 / 2e-59 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 202 / 7e-59 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 201 / 2e-58 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 197 / 4e-57 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 197 / 4e-57 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 196 / 1e-56 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 195 / 1e-56 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 195 / 2e-56 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022864 pacid=23159956 polypeptide=Lus10022864 locus=Lus10022864.g ID=Lus10022864.BGIv1.0 annot-version=v1.0 ATGATTTCTGCTGATCCTCGGGGCGCTTTGAGCTCGTGGAACGATTCTACCCATGTTTGCAAGTGGTATGGTGTGTCGTGTACTAAAACACATTACGGTA GAGTCACTGTTTTAAGCCTGCCATCCCAATCGCTCTCTGGCTCTATTTCGCCACATGTCGGGAATCTCAGCTTCCTGAGAGTGTTGAGCCTCTACAACAA CAGCTTCGTCGAGGACATACCTCCTGAAATCAGCCGTCTTCGTAGATTGCAGCGGTTGGTGCTCTACAACAACTCGCTTGGCGGTAACATCCCTTCCAAC ATCTCAGGATGCTCCGCTCTTACCGGATTCGATGTGGGTAATAATAAGCTGGTGGGAGGACTGCCCTGGCGATTTGGCCTATTGAACAAGCTCCGATTTT TCGGAGTAGCAATCAACTATCTCAACCGAGCCATCCCTCCCGGTTTTGGCAACATGTCGTCTCTTGTAATTTTTGACGGATCCTCCAATCAATTAAGTGG GAGAGTTCCTGATACTCTAGCCCAACTCAAGAATATTCAGTATTTTGCTCTGAATATCAACAACTTATCTGGTGAAATCCCTGATTCGATTTTCAATCTT TCTTCTCTCGGGGATTTGTGGCTGGGATCGAAACAACTTCGTGGAAATCTTCCTTGGAACATGGGAATATCGCTTCCGAATCTTGAAAATTTCGACGTGC ATCCAATTTGCTTCTGCTGCAACTCGACTACAACAATTTTATGGGGAGCATGCCTGGTCTGGTGGTCTCTACCGAGCTGTGGTGTCTTGGGATTAGCCGC AACTTTCTTGGAAGTGGGAAGGCTGATGATCTGA
AA sequence Show only first row Show all	>Lus10022864 pacid=23159956 polypeptide=Lus10022864 locus=Lus10022864.g ID=Lus10022864.BGIv1.0 annot-version=v1.0 MISADPRGALSSWNDSTHVCKWYGVSCTKTHYGRVTVLSLPSQSLSGSISPHVGNLSFLRVLSLYNNSFVEDIPPEISRLRRLQRLVLYNNSLGGNIPSN ISGCSALTGFDVGNNKLVGGLPWRFGLLNKLRFFGVAINYLNRAIPPGFGNMSSLVIFDGSSNQLSGRVPDTLAQLKNIQYFALNINNLSGEIPDSIFNL SSLGDLWLGSKQLRGNLPWNMGISLPNLENFDVHPICFCCNSTTTILWGACLVWWSLPSCGVLGLAATFLEVGRLMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	2.4	0.8816
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	3.7	0.8675
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	5.2	0.8642
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10014442 [exp]	5.4	0.8303
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	7.0	0.8581
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	8.5	0.8609
AT3G21690			MATE efflux family protein (.1...		Lus10039675 [exp]	9.2	0.8605
AT3G24715			Protein kinase superfamily pro...		Lus10038160 [exp]	11.9	0.8102
					Lus10036593 [exp]	13.0	0.8563
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	15.5	0.8335

Compare expression of checked genes

Lus10022864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.