Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022865 pacid=23160046 polypeptide=Lus10022865 locus=Lus10022865.g ID=Lus10022865.BGIv1.0 annot-version=v1.0 ATGGCGGGTAAATCTGTGTCAAAATGCGAGATCGAAAAATTCGTCCTAGCATATAACCCTGTAGCTTTATGTCCTGCAAGTAATGGTTCCAGTCCTGATG CTAAGTGTTCACATCAGCCAGCATTTTGTACTCTGACCGGAGAATTAAAGAGTATCTCTTCGGAACTGAGATTACAGTTCATTGTTGTACCAGACCTGAT CTTCAATACGAGTTGGAAACTCCGTGAGGTGTACATAGAAAGTTTAGGTTTGTCCACAGGAATTAGACAGGTACCGGAGAAATGGACAGTATGGATCTCT TCCTTGCTTTGCTTCTTTGTCAGTCAGTGA
AA sequence Show only first row Show all	>Lus10022865 pacid=23160046 polypeptide=Lus10022865 locus=Lus10022865.g ID=Lus10022865.BGIv1.0 annot-version=v1.0 MAGKSVSKCEIEKFVLAYNPVALCPASNGSSPDAKCSHQPAFCTLTGELKSISSELRLQFIVVPDLIFNTSWKLREVYIESLGLSTGIRQVPEKWTVWIS SLLCFFVSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022865 [exp]	0	1
					Lus10028460 [exp]	2.8	0.8157
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	5.2	0.7943
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10003109 [exp]	9.1	0.8212
					Lus10018591 [exp]	9.2	0.7413
AT5G52390			PAR1 protein (.1)		Lus10040714 [exp]	10.1	0.7415
AT3G09730			unknown protein		Lus10023175 [exp]	11.2	0.7203
AT2G34930			disease resistance family prot...		Lus10000220 [exp]	14.0	0.6150
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10009145 [exp]	15.7	0.6304
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	25.1	0.7516
					Lus10032788 [exp]	25.8	0.7566

Compare expression of checked genes

Lus10022865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.