Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 1006 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 630 / 0 Subtilase family protein (.1) AT3G14240 615 / 0 Subtilase family protein (.1) AT5G51750 594 / 0 ATSBT1.3 subtilase 1.3 (.1) AT5G67360 592 / 0 ARA12 Subtilase family protein (.1) AT3G14067 575 / 0 Subtilase family protein (.1) AT4G34980 573 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 550 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 535 / 3e-180 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 492 / 1e-163 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024960 [exp] 1406 / 0 AT1G04110 1054 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10034900 [exp] 615 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 611 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10036546 [exp] 603 / 0 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10013187 [exp] 601 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 598 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10037449 [exp] 595 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 587 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 584 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256300 [exp] 1146 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 631 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 621 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.014G074600 [exp] 621 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.001G163600 [exp] 607 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 607 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.003G118800 [exp] 605 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G071800 [exp] 602 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 599 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.001G167300 [exp] 589 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10022866 pacid=23159961 polypeptide=Lus10022866 locus=Lus10022866.g ID=Lus10022866.BGIv1.0 annot-version=v1.0 ATGGAGCCCAAAGTTCTTACCTTTTTACACGTTCTGTTGTCTTTCACAGCCGTAGTCTTGCTTCATGCAGCCAAGCCCCCTCTCGAAACCTACATTGTTC AACTCGACCCGAATGGTTCTTCTACCTCTTCATTTGGCTCCAAGCTTAACTGGCACCTTTCCTTCCTTGACCAGCTTTCACTTTCAGATGACGATGAACA ACATTCTTCTTCGTCCCGCCTTCTTTACTCTTACACGTCTGCGATGGAAGGTTTCGCTGCTCAGCTCTCCGACTCCGAGGTCGAGATGTTGAAGAAGCTC CCAGATGTCGTTTCCATTAGGCCCGACGAGAGCCTCCAGCTCCAAACTACTTACTCCTACAAGTTCCTGGGGCTCACTCCTGCTAGGGACGATGCTTGGT ATCGATCAGGATTCGGTCGTGGAGCCATCGTTGGGGTCCTCGACACAGGAGTCTGGCCCGAGAGTCCGAGCTTCAACGACAAAGGGATGCCACCTGTTCC AAGGAAGTGGAAAGGAATCTGTCAACGAGGCCAGGATTTTGATTCCTCGAACTGCAACCGGAAGCTCATCGGTGCAAGGTTCTTCACCAAAGGTCACAAT GTAGCTTCTTCATCGGCAGGAGTCGAAGAATATGCATCGCCTCGAGATTCTCATGGCCATGGAACGCACACTTCATCTACTGCCGGAGGCACTTCCGTTC CGATGGCTAGCGTGCTCGGAAATGGAGCAGGAGTTGCTCGAGGGATGGCTCCCGGTGCGCACATCGCGGTCTACAAAGTTTGCTGGACCAACGGTTGCTA CAGCTCCGATATTCTGGCTGCAATGGACACAGCTATAGTAGATGGAGTCGACATACTGTCCCTCTCGATCGGTGGGTTCCCGTTGCCACTCTACGGGGAC AGCATAGCAATCGGCAGCTTTCGAGCAATGGAACACGGGATCTCGGTAATATGCGCAGCAGGAAACAGTGGCCCTCTCCAATATTCAGTTGCCAATGAAG CTCCATGGATTGCTACCATAGGAGCAAGCACATTGGACAGGAGTTTCCCAGCTATAGTTCGACTCGGGAACGGAGAGTACCTCTACGGGGAGTCCATGTA TCCAGGAAACCAATTTTCGAGCTCCACTAAGGAATTCGAACTGGTTTATGCATCTGGCAGCAAGAGAGGGCCTGAATTCTGCTTTGCAGGCTCTCTCCCC AAGGGTAAGATCAAGGGGAAGATGGTAATTTGCGACCGAGGCGTTAATGGCAGGGCTGAAAAGGGGCAGGTGGTTAAGCAGTCTGGTGGTGCTGCAATGA TCTTAGCGAACACAGCAATCAACATGGAAGAAGATTCGGTTGATGTCCACGTATTGCCTGCAACGGCTGTAGGATTTGCAGAATCGATCCGGCTGAAAGC TTACATCAACTCCACAACCAAGCCAACCGCTCGCATTGTGTTTGGTGGAACTGTTATTGGTAAAGCAAGAGCACCAGCAGTTGCGCAGTTTTCAGCCAGG GGACCGAGCTTCAGCAACCCTTCGGTGTTGAAACCGGATGTTATCGCACCGGGAGTCAATGTCATAGCAGCTTGGCCACAGAACTTGGGTCCCACCGGTC TTCCGGAAGATTCCAGAAGAACGAATTTCACAGTAATGTCGGGGACGTCCATGGCATGTCCCCATGTCAGCGGCATTGCAGCGTTGATACGATCAGCTCA TCCGAAATGGAGCCCTTCAGCTGTCAAATCCGCAATCTTGACGACTACAGATGTGACTGACCATTCCGGAAACCCCATAATGGATGGTGATAAACCGGCT GGAGTTTTCGCCATGGGAGCCGGGCATGTGAATCCGGAGAAGGCAATGAATCCAGGACTGGTGTATGATATCAAGCCAGATGATTATGTCACTCATCTAT GCACACTTGGATACACAAGACTGGAGATTTTCACCATCACACATAAGAATGTTACCTGCGGCGAGTTGCTGAAGATGAACAAGGGTGGTTTCAGCCTGAA TTACCCTTCCATCTCTGTAATGTTCAACCAAGGAGGATCAGGGAGGAAGATGATCAGGAGGAGAGTAACCAACGTAGGCCAACCGAATTCCATCTACTCA GTGGAAGTCAAAGCTCCCCAGGGAGTGAAGATTCGAGTGAAACCGAGAAAGCTCGAGTTCAAGGAGAGAAACCAGGTTTTGAGTTACAAGGTGTGGTTCA TATCAAGGAAGAGAATCACAAAGGAGAAGCTAACTTTTGCAGAAGGACATCTGACATGGATAAACTCTGAAAACCGTCTCACCAGGGTCAGAAGCCCCAT CTCGGTGACATGGAAGAGGAAATAA
AA sequence Show only first row Show all	>Lus10022866 pacid=23159961 polypeptide=Lus10022866 locus=Lus10022866.g ID=Lus10022866.BGIv1.0 annot-version=v1.0 MEPKVLTFLHVLLSFTAVVLLHAAKPPLETYIVQLDPNGSSTSSFGSKLNWHLSFLDQLSLSDDDEQHSSSSRLLYSYTSAMEGFAAQLSDSEVEMLKKL PDVVSIRPDESLQLQTTYSYKFLGLTPARDDAWYRSGFGRGAIVGVLDTGVWPESPSFNDKGMPPVPRKWKGICQRGQDFDSSNCNRKLIGARFFTKGHN VASSSAGVEEYASPRDSHGHGTHTSSTAGGTSVPMASVLGNGAGVARGMAPGAHIAVYKVCWTNGCYSSDILAAMDTAIVDGVDILSLSIGGFPLPLYGD SIAIGSFRAMEHGISVICAAGNSGPLQYSVANEAPWIATIGASTLDRSFPAIVRLGNGEYLYGESMYPGNQFSSSTKEFELVYASGSKRGPEFCFAGSLP KGKIKGKMVICDRGVNGRAEKGQVVKQSGGAAMILANTAINMEEDSVDVHVLPATAVGFAESIRLKAYINSTTKPTARIVFGGTVIGKARAPAVAQFSAR GPSFSNPSVLKPDVIAPGVNVIAAWPQNLGPTGLPEDSRRTNFTVMSGTSMACPHVSGIAALIRSAHPKWSPSAVKSAILTTTDVTDHSGNPIMDGDKPA GVFAMGAGHVNPEKAMNPGLVYDIKPDDYVTHLCTLGYTRLEIFTITHKNVTCGELLKMNKGGFSLNYPSISVMFNQGGSGRKMIRRRVTNVGQPNSIYS VEVKAPQGVKIRVKPRKLEFKERNQVLSYKVWFISRKRITKEKLTFAEGHLTWINSENRLTRVRSPISVTWKRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10022866 [exp]	0	1
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10034925 [exp]	3.0	0.7905
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10038077 [exp]	12.0	0.7086
AT1G63610			unknown protein		Lus10016008 [exp]	15.1	0.7374
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	21.9	0.7755
AT2G04360			unknown protein		Lus10000124 [exp]	25.5	0.7433
AT5G53920			ribosomal protein L11 methyltr...		Lus10022389 [exp]	27.8	0.7482
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10014297 [exp]	36.7	0.7385
AT5G35870			unknown protein		Lus10001176 [exp]	36.7	0.6497
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10023133 [exp]	47.3	0.7297
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	57.3	0.7048

Compare expression of checked genes

Lus10022866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.