Plant FIBer expression Database

Lus10022867 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28660 204 / 2e-67 PSB28 photosystem II reaction center PSB28 protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024959
[exp]
329 / 5e-117 AT4G28660 214 / 2e-71 photosystem II reaction center PSB28 protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G256400
[exp]
236 / 2e-80 AT4G28660 211 / 2e-70 photosystem II reaction center PSB28 protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03912 Psb28 Psb28 protein
Representative CDS sequence
>Lus10022867 pacid=23160000 polypeptide=Lus10022867 locus=Lus10022867.g ID=Lus10022867.BGIv1.0 annot-version=v1.0
ATGGCCGCGACTCTGCAATCTCTGGCATTAGCTTCTCCGGTCTCCCATCGCCGCCATTACCAGCAACCCAAAGCAGCTCTCTCAGCATTGCCGGCGCTCA
ATTGCTCGAAATCCATCTCCTATGGCCATTCCTTATGCCTACCTTCAACCAAAAGGAAGTCTCGGTCTTCATCGTCATCTGGGTTTGTGGTGAGGATGAT
GGCGAAGCCGTCGATCCAGTTCATCCAAGGAACAGACGAGCAGACGGTGCCGGATGTGAAGCTGACAAAGTCGAAGGACGGCACAAACGGCGTCGCATTG
TTCAGCTTCGACCAGCCTTCCGTGTTCGACTCGTCAGGTGAACTTGGTGACATCACTGGCTTCTTCATGATTGACGAGGAAGGAGTTCTACAATCGGTCG
ATGTCAGTGCCAAATTTGTGAATGGGAAACCGTCTCGAATCGAGGCCAAGTATGTGATGCGGAATCCGAGGGAATGGGATAGGTTCATGAGGTTCATGGA
GAGATATGCTAATGCCAATGGCTTGCAGTTCGTCAAGAAATAA
AA sequence
>Lus10022867 pacid=23160000 polypeptide=Lus10022867 locus=Lus10022867.g ID=Lus10022867.BGIv1.0 annot-version=v1.0
MAATLQSLALASPVSHRRHYQQPKAALSALPALNCSKSISYGHSLCLPSTKRKSRSSSSSGFVVRMMAKPSIQFIQGTDEQTVPDVKLTKSKDGTNGVAL
FSFDQPSVFDSSGELGDITGFFMIDEEGVLQSVDVSAKFVNGKPSRIEAKYVMRNPREWDRFMRFMERYANANGLQFVKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28660 PSB28 photosystem II reaction center... Lus10022867
[exp]
0 1
AT4G28660 PSB28 photosystem II reaction center... Lus10024959
[exp]
1.0 0.9615
AT1G15820 CP24, LHCB6 light harvesting complex photo... Lus10020418
[exp]
3.5 0.9415
AT4G37200 HCF164 HIGH CHLOROPHYLL FLUORESCENCE ... Lus10022477
[exp]
3.5 0.9366
AT1G15820 CP24, LHCB6 light harvesting complex photo... Lus10020415
[exp]
3.9 0.9322
AT1G55670 PSAG photosystem I subunit G (.1) Lus10028806
[exp]
4.2 0.9496
AT1G31330 PSAF photosystem I subunit F (.1) Lus10018273
[exp]
6.9 0.9247
AT1G31330 PSAF photosystem I subunit F (.1) Lus10040639
[exp]
10.5 0.9164
AT1G60950 FED A, ATFD2, F... FERREDOXIN 2, 2Fe-2S ferredoxi... Lus10015462
[exp]
11.0 0.9276
AT2G38270 ATGRX2, CXIP2 GLUTAREDOXIN, CAX-interacting ... Lus10002847
[exp]
12.0 0.9103
AT2G30570 PSBW photosystem II reaction center... Lus10014751
[exp]
12.4 0.9257

Lus10022867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.