Plant FIBer expression Database

Lus10022869 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20390 183 / 3e-59 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024957
[exp]
248 / 9e-86 AT2G20390 126 / 7e-38 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G256700
[exp]
221 / 5e-74 AT2G20390 195 / 8e-64 unknown protein
Potri.014G193150
[exp]
47 / 2e-07 AT2G20390 47 / 7e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10022869 pacid=23159907 polypeptide=Lus10022869 locus=Lus10022869.g ID=Lus10022869.BGIv1.0 annot-version=v1.0
ATGAGAAAGCTTGCAATTTGTGGGGCAAGCAGCGTTGCGAAGCCGGTGGAGGAAGGATCAAAGATTGAGGCATCCTCATCATCATCAATTGGTCGTAAGG
CTGTTTCCTTTGTGCTGATCACTGTTACGGGTGGTGTTGCTTTGAGCGCTCTGGATGACCTATCTATATACTATGGCTGCACCAGCAAGGCAATGGAGAG
AGCATGTAACAATGAGGCAGTTAAAGAAGCTATTGGCGAACCAGTAACAAAAGGTGCATGGTACAACGCTTCACTTGCGGTAGCTCACAAAAGGCAATCT
GTTTCTTGTTCGTTTCCGGTCTCTGGACCACGTGGCGATGGAGTTGTACGGCTGAAAGCAATTCGTAATCCAGATGACAACTGGTTGTCGTATGTCCTCC
CTCGGGACTGGGAGATCGTGATTATGGATGCTCTCCTCCACATTCCGGGCAACGAAGGATCTAGCTCCTCAACGCAGCGGATCAACCTATTGGACAGCTC
GCCGCAGGCATGCCAGCCTTGCATGGCTTGCCCAAGACCCCAAGAAACCCAGAAGACAGAAAGCAAATGA
AA sequence
>Lus10022869 pacid=23159907 polypeptide=Lus10022869 locus=Lus10022869.g ID=Lus10022869.BGIv1.0 annot-version=v1.0
MRKLAICGASSVAKPVEEGSKIEASSSSSIGRKAVSFVLITVTGGVALSALDDLSIYYGCTSKAMERACNNEAVKEAIGEPVTKGAWYNASLAVAHKRQS
VSCSFPVSGPRGDGVVRLKAIRNPDDNWLSYVLPRDWEIVIMDALLHIPGNEGSSSSTQRINLLDSSPQACQPCMACPRPQETQKTESK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20390 unknown protein Lus10022869
[exp]
0 1
AT5G62050 ATOXA1, OXA1AT,... HOMOLOG OF YEAST OXIDASE ASSEM... Lus10032381
[exp]
3.0 0.8363
AT5G22100 RNA cyclase family protein (.1... Lus10004092
[exp]
9.5 0.8147
AT1G43170 RPL3A, ARP1, EM... embryo defective 2207, ribosom... Lus10006181
[exp]
14.1 0.7994
AT5G56090 COX15 cytochrome c oxidase 15 (.1) Lus10033332
[exp]
16.5 0.7929
AT3G58610 ketol-acid reductoisomerase (.... Lus10022849
[exp]
16.7 0.7889
AT4G23620 Ribosomal protein L25/Gln-tRNA... Lus10011005
[exp]
18.2 0.8018
AT1G04520 PDLP2 plasmodesmata-located protein ... Lus10023726
[exp]
19.4 0.7853
AT3G56550 Pentatricopeptide repeat (PPR)... Lus10037387
[exp]
19.9 0.7685
AT3G11250 Ribosomal protein L10 family p... Lus10014841
[exp]
20.0 0.8048
AT1G29900 VEN3, CARB VENOSA 3, carbamoyl phosphate ... Lus10021430
[exp]
22.8 0.8036

Lus10022869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.