Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03530 230 / 2e-64 ATNAF1 nuclear assembly factor 1 (.1) AT4G03380 52 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024956 [exp] 614 / 0 AT1G03530 266 / 1e-79 nuclear assembly factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G145300 [exp] 243 / 1e-69 AT1G03530 280 / 2e-83 nuclear assembly factor 1 (.1) Potri.019G104400 [exp] 234 / 1e-66 AT1G03530 244 / 3e-70 nuclear assembly factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF04410 [flax] [poplar] Gar1 Gar1/Naf1 RNA binding region
Representative CDS sequence Show only first row Show all	>Lus10022870 pacid=23160037 polypeptide=Lus10022870 locus=Lus10022870.g ID=Lus10022870.BGIv1.0 annot-version=v1.0 ATGGTGAGATTCCTCTCTAAACCAGCTATCGAAGAACAGCACCACCATTCCCACAATCAACCTTCTTCTTCGCCGTTGAAGGATAATACCGTCGTCGTCT CAAGCGGTGGTCTTGATCAAGCCAACCTCCTCCCCGACGTGTCGTTTGCTGATTCGCTGCTCAATTTCGAGTTCATCAAGGACTTCTTCGAGGACAGCAT GGAGCCGGACACCGCCAGCTTGGAGAACGTTGATGTTCGGGAGTTTGAGAATATACTGCACAGAGATATCTCCGTTGCTTCTGATGAAGTCATTGATGTG TCTGATTCTGGTCGTTTGAGTACTGAGGAAGTTGTTGTTAAGGAGGAGGAACCTCTGGAGTTGCAGACTGGGGTAAACCTTGGCAGCGGCTCTATAGAGG AAGATATGGGGAGAGTGAGTTTGGTTGCTAATGGTAATGGTGAAGTAGAGATTAAGGAGGAGGAGGAGATGGAAAATGATGTGAACAATGTTGCAACTGA TGTTGGTGAAGCTGATTCGGATTCTGATGGACAAAGTAGCTCGTCCAGTTCCGGCTCTTCTTCGTCATCAGACTCCAGCAGCAGTGATGATGATGAAGAA GAAAAAGAGGAGAAGGAAGAAAAAGATAGTGCTGATGTGAAAGCAGACATTGAGTTGAAAGTGGTGGGGGAAATGGGTGAAGATGAGGTTGAGGAGGGTG AAATCAGAGGTGAGGGAGATAATCTGTTAGTTAGGAGTGACGATGAGGATGAGGAGGACAATGTGACGGATGAAGTGAACAAGATGGTTGAATGGAGTGA TGTTGATGAGGAAGAAGATGGGGATATTGGAGGTGAAAAGAGTCCTATTAGATCAAAGAATGAGCTCAAGGCCCTTCCACCTGTTCCTCCGGTCGAAGCT GTGCTGCTACCACATCACGAAATGCAACCTGTTGGACTTGTCTCATCGGTTCTTGGTACGCAAGTCATCGTGGAAGGAGTGGAGAAGCACAACCCTCTAA ATGAGGGCTCTATCATTTGGTTAACTGAGAAAAGATCTCCTCTGGGTCTGGTGGATGAAATTTTTGGACCTGTGAAGAATCCGTTCTATATAGTGAGATT CAATTCCGAAAGCGAAGTTCCCGAGGGCCTTTGCGAAGGCACTTTGGTCTCCTTTGTTCCCGAGTTCGCTGGCTTTGTTCTGTCTAACCAAAACCTCTAC AAGAAAGGATATGATGCTTCGGGTGAGAACGACGAGGAGTTGTCTGAGGAGATCGAGTTCTCAGACGACGAGAAAGAAGCAGAATACAGGAGAATGAAGA AAATGGTAAAGAGAGGGATGAATGGCCAGACAACAGTTGGAAACAAGAAAAGGAATAAGAAGAAGGCCGATGAGAGGCGTGGGGGAGACTGGAAGAACGA TAACAACCCTTCATGGCAGCAAGCTGGAAATGATCCCGGTCAGCAGCATACTGCTAACGGGAATCAGCATAGCGCATCTCCATGTCAACATGATCGAACT GATCCCGGTCAGCGGCATCCTCCCAGTTCATTTCAGCAAGTTCAAGCTGATCTGGGTCAGCAGCATCCTCCCAATGCAAATCAGCAGCATCCTCCCAATG TAAATCAGCAGCATAACAATGCCTCTCCAGTTCAATCATCAGCTGTCATGGGACAAGGGATTAATGGTGGCAACAACCCATTTGTTCCACCGTTTCGGCC AATGTTGCAGCAGCAGAACTCGGGATTCTTCCCACCTCCGAATGGGAATTGGCCAAATGGGTTGTTTCCCCAACATCAACAGAATCCAGCAGCACCACAT CAGTTTGGTGGTGGTTTTCCGGGTGGTAACATTCACAACCCGTTGCAGATGCAGATTCAAAGCTTGATGCAGCAGCTTCAGCAACAACTCAATGCTGGTA ACGTAATGCTACCCACCGGGCAGCCGAATTTCTTCCAAGCTCCTGGTTTCATGCCTTGGCCAGCAGCAGCACCAGCAGGAGGAGGAATGATAAACCAAGG CGGCAGCTTCAACCAACCACCGCCTCCATTTGGTATGGGCGGCTTTCTTCATCAGCCTGCCAACCCAACCATTATGAACAACTCCATGAACATGGGAGAC CAAGGAACGATGCCCCCTGGCGTGCAACCGCCGGCAAATGCTCCTGGCAGTGTCCAATCTCCTCAGCAGCAATCCGGAAACGGTCAACAGCTATCTGGGA ACGGTCAGCAGCAATCCAGAAACAGTCTTCCTCCCCGAAACTTCAACGCTGGTGGAGGTAATTCTTCGAATCAAGGAAGGAGGCCGTTCCGTGGGAGAGG AGGTGGTCGGTTTAGAGGCAGGGGAGACAGATAA
AA sequence Show only first row Show all	>Lus10022870 pacid=23160037 polypeptide=Lus10022870 locus=Lus10022870.g ID=Lus10022870.BGIv1.0 annot-version=v1.0 MVRFLSKPAIEEQHHHSHNQPSSSPLKDNTVVVSSGGLDQANLLPDVSFADSLLNFEFIKDFFEDSMEPDTASLENVDVREFENILHRDISVASDEVIDV SDSGRLSTEEVVVKEEEPLELQTGVNLGSGSIEEDMGRVSLVANGNGEVEIKEEEEMENDVNNVATDVGEADSDSDGQSSSSSSGSSSSSDSSSSDDDEE EKEEKEEKDSADVKADIELKVVGEMGEDEVEEGEIRGEGDNLLVRSDDEDEEDNVTDEVNKMVEWSDVDEEEDGDIGGEKSPIRSKNELKALPPVPPVEA VLLPHHEMQPVGLVSSVLGTQVIVEGVEKHNPLNEGSIIWLTEKRSPLGLVDEIFGPVKNPFYIVRFNSESEVPEGLCEGTLVSFVPEFAGFVLSNQNLY KKGYDASGENDEELSEEIEFSDDEKEAEYRRMKKMVKRGMNGQTTVGNKKRNKKKADERRGGDWKNDNNPSWQQAGNDPGQQHTANGNQHSASPCQHDRT DPGQRHPPSSFQQVQADLGQQHPPNANQQHPPNVNQQHNNASPVQSSAVMGQGINGGNNPFVPPFRPMLQQQNSGFFPPPNGNWPNGLFPQHQQNPAAPH QFGGGFPGGNIHNPLQMQIQSLMQQLQQQLNAGNVMLPTGQPNFFQAPGFMPWPAAAPAGGGMINQGGSFNQPPPPFGMGGFLHQPANPTIMNNSMNMGD QGTMPPGVQPPANAPGSVQSPQQQSGNGQQLSGNGQQQSRNSLPPRNFNAGGGNSSNQGRRPFRGRGGGRFRGRGDR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10022870 [exp]	0	1
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	1.7	0.9449
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	2.0	0.9430
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	2.2	0.9195
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Lus10021430 [exp]	3.0	0.9301
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10012920 [exp]	4.6	0.9128
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	5.5	0.9101
AT5G22100			RNA cyclase family protein (.1...		Lus10013351 [exp]	5.7	0.9097
AT4G30840			Transducin/WD40 repeat-like su...		Lus10007707 [exp]	6.0	0.9107
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10020149 [exp]	6.3	0.9128
AT3G11250			Ribosomal protein L10 family p...		Lus10014841 [exp]	6.3	0.9273

Compare expression of checked genes

Lus10022870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.