Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49170 77 / 2e-18 unknown protein AT3G06840 63 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024954 [exp] 270 / 3e-94 AT5G49170 96 / 3e-25 unknown protein Lus10036097 [exp] 122 / 6e-36 AT5G49170 97 / 2e-25 unknown protein Lus10006495 [exp] 85 / 3e-21 AT5G49170 118 / 9e-34 unknown protein Lus10006494 [exp] 74 / 5e-17 AT3G06840 102 / 1e-27 unknown protein Lus10026782 [exp] 62 / 2e-13 ND 42 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G219500 [exp] 97 / 1e-25 AT3G06840 136 / 1e-40 unknown protein Potri.010G010600 [exp] 89 / 9e-23 AT3G06840 132 / 4e-39 unknown protein Potri.003G073200 [exp] 44 / 6e-06 AT3G06840 46 / 2e-06 unknown protein Potri.001G162100 [exp] 43 / 2e-05 AT3G06840 53 / 7e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022872 pacid=23160049 polypeptide=Lus10022872 locus=Lus10022872.g ID=Lus10022872.BGIv1.0 annot-version=v1.0 ATGGGAAGCAAAAGCAAAGCCCCAGTTTACCCAATGCCGCAACAAGAGGACCTCCCTCCCCATTTCAGCGACTATGGCTTCGACCCACAAATCGACTACT TCCAGTTGATGGAAGAAGCAAGGAAGAATCACAAGCGAGACGATTGCATCACACGCTTTAAGCTACGGAAGCCCATCCCTAGAGACGAATCCTCCTCCTG CCGTAAGACGACGTCGTTTAAGAAGAGGCGGTGGTGGAAGAAAGCTCTACCCTTCTTCAACATCAAGAACTGGATTCTTCATCGCCGGAGCAGCGGTGGG AAAGAAGAAGACGTTCATAGAGCTAGAGCTCGCGATTTCAGGTCCAGCAGAGCTTCTTCTTCCGGTCCGATGGATCTGGCGTACGTTAGCCTCAGGGAGC TTACCATGGAGCAGCAGCAACAACAACATTGCCCGGTTAATTGGTCGTCTGTCTCGATCACAAACAGAGGATAG
AA sequence Show only first row Show all	>Lus10022872 pacid=23160049 polypeptide=Lus10022872 locus=Lus10022872.g ID=Lus10022872.BGIv1.0 annot-version=v1.0 MGSKSKAPVYPMPQQEDLPPHFSDYGFDPQIDYFQLMEEARKNHKRDDCITRFKLRKPIPRDESSSCRKTTSFKKRRWWKKALPFFNIKNWILHRRSSGG KEEDVHRARARDFRSSRASSSGPMDLAYVSLRELTMEQQQQQHCPVNWSSVSITNRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49170			unknown protein		Lus10022872 [exp]	0	1
AT3G27360			Histone superfamily protein (....		Lus10031252 [exp]	3.5	0.9156
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10042353 [exp]	4.9	0.8907
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	6.8	0.9148
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	7.5	0.8551
AT3G18060			transducin family protein / WD...		Lus10042944 [exp]	11.1	0.8039
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	12.2	0.8927
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10022810 [exp]	12.6	0.8642
AT4G16807			unknown protein		Lus10010996 [exp]	12.7	0.8794
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	13.9	0.8535
AT2G40435			unknown protein		Lus10025257 [exp]	15.0	0.8084

Compare expression of checked genes

Lus10022872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.