Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04080 775 / 0 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT5G46400 395 / 3e-123 ATPRP39-2 ,AT PRP39-2 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G17760 72 / 8e-13 CSTF77, ATCSTF77 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G41770 53 / 1e-06 crooked neck protein, putative / cell cycle protein, putative (.1) AT5G45990 49 / 1e-05 crooked neck protein, putative / cell cycle protein, putative (.1) AT3G51110 49 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G13210 46 / 9e-05 crooked neck protein, putative / cell cycle protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024952 [exp] 1271 / 0 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10015257 [exp] 364 / 2e-111 AT5G46400 384 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025377 [exp] 243 / 4e-69 AT5G46400 392 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003684 [exp] 62 / 1e-09 AT1G17760 971 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034294 [exp] 62 / 1e-09 AT5G41770 1153 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10041477 [exp] 61 / 4e-09 AT5G41770 1161 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Lus10028994 [exp] 59 / 2e-08 AT1G17760 957 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005168 [exp] 48 / 4e-05 AT4G24270 764 / 0.0 EMBRYO DEFECTIVE 140 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192800 [exp] 911 / 0 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.002G257100 [exp] 905 / 0 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.003G106200 [exp] 65 / 2e-10 AT1G17760 1037 / 0.0 ARABIDOPSIS THALIANA CLEAVAGE STIMULATION FACTOR 77, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G094400 [exp] 56 / 1e-07 AT5G41770 1117 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1) Potri.003G137200 [exp] 53 / 8e-07 AT5G41770 1150 / 0.0 crooked neck protein, putative / cell cycle protein, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022874 pacid=23159982 polypeptide=Lus10022874 locus=Lus10022874.g ID=Lus10022874.BGIv1.0 annot-version=v1.0 ATGGCAGACAGTGACGCAGCGGTTTCTGGGTCAGCCACTGTTACCGAGTATGCATCTGCTGGATTTAGCAACACGATCCCTAGCTCAGATGCTTATGCTG CGGGTACTGCTGAAGCTTATGGTGTAAATGCAGCGGGTGGCAGTGCATATGGTGCAAATTCTGATTCTGTTATGCATGACGCCCATGGCAATGCTTATGA TGCCAAGACTGTTGCTGCGGAGAATGCAGCTGCCCCCCAGCCACCTACTTACTCATCCGCAAATGGGAATATTGGTAGTGCAGGTGAAACTGTTGCATCA GTTGAAAATGGGGGTTCTGCAGAAGATGCTAGTGCATCCGCTATGAAGCAACAGTTACTAGATGGTTCTGTTCCTGCTTCATCACCCGAGGAGGATCGGT TGTGGAACATTGTCAGAGCTAATTCATTGGATTTTGATGCTTGGACTGCATTGATAGATGAAACAGAGAAGGTTGCATGGGACAAGATACGAAAAATAAG GGCTGTCTATGATGCATTTTTGGCTGAATTTCCTCTATGCTATGGTTATTGGAAAAAGTATGCTGATCATGAGGCACGACTTGGTGACATGGACAAAGTG GTTGAGGTGTATGAGCGAGCTGTTCTTGGCGTGACATATTCGGTGGATATTTGGTTGCATTATTGCACATTTGCCATTAGTACTTATGGCGATCCAGAAA CTATTAGAAGGCTTTTTGAACGGGGTTTAACCTACGTTGGAACAGATTATTTATCTCATCCTCTCTGGGACAAATACATTGAATACGAGGAAATGCATTC AGAGTGGCCCCGTGTTGCAACAATATACACCAGAATACTAGATATCCCAAATAAACGTCTAGATGAATATTTCAACAGATTTAAGGAGTTTGCTGCCAGT CGACCTCTGTCAGAATTGAGATCTGCAGAAGAAAATCCTGCTCCGCCTGAGAATGGCGACCAAGCAAGTGAAGAAATGGTGCGCCCTGAGGATTCAGAGC TCTCCACTAAGCCTGCGAGTCCTTGCTCAGAAGCAGAGGAGTTGGAGAAGTACACTGCTGTCAGAGAGGAGCTATATAAGAAAGCTAAAGAGTTTGATTC TAAGATCTGTGACTTCGAAAATGCTATTAGGCGGCCCTACTTTCATGTGCGGCCCCTCAATGTTGCAGAGCTTGAAAACTGGCATAACTATCTGGACTTC ATGGAAGCACAAAATGATCTGAACAAGGTTGTAAAACTATATGAAAGATGCCTAATTGCGTGTGCAAATTATCCCGAGTATTGGATGCGCTATGTCCTGT GCATGGAAGCCTGTGGAAGTATGGATATTGCTGATAATGCTCTTGTTCGTGCAACTGAAAGACAGCCAGATATCCATCTCTTTGCTGCCCGATTTAGAGA GCAGAATGCAGATATCCCTGGTGCTCGAGCAGCATACCAACGGGTGCACGCTGAAATTACACCTGGCCTCTTGGAAGCAATAATTAAGCATGCAAACATG GAACATCGACTGGGAAACCTTGAAGATTCCTTTTCTTTATACGAACAAGCCATTGCCATTGAAAAAGGAAAAGAGCAGTCTCAGGTGTTACCAATGCTGT ATGCACAGTACTCGCGATTTGTCTACATGGCGTCTGGGAATGCAGAGAAAGCAAGGGAAATTTTGGAGAAAGCTATTGATAATGTCCAATTCTCAAAACC ACTTCTTGAGGCGTTCATACAACTGGAGTCAATTATGTCCCTTCCAAAGCGAATTGACCACTTAGATTCATTGGTCGACAAGTTTATCACACCAAGCTCA GATAGTACTGCTAGTGCTACTGACCGGGAAGAGCTATCGTGTATTTTCCTAGAGTTCTTAAATGTCTTTGGAGATGTAACAACAATCAAGAAGGCCGAAG ACCGCCATGCCAAGCTGTTCTTGCCCCACAGGAGCAAATCAGAGTTGAAAAAGCGTCATGCTGAGGATTACATGTCCTCAGATAAGACCAAAGTTCCAAA GTCATATGCTGATCCTGCAGCAGCTGCACAATCTGCAATGGGTGGCTACCCGGCCACTGCACAAAACCAGTGGCCTGCTGGTTATGCTGCACAACCTCAA GCTTGGCCTCAGGCTACTCAGGCTCCAGTTCAACAGTGGGGACCTGGATACACTCAACCAGCTGCCTATGGTGCATATGGAGGTGCGGCGTATGGGGGCG GCTACACGGCTCCTGCTCCTCAGGCTCCGACATCTGTCCCGCCAACAGCTGCATATGGTGCTTATCCTCCGACGTACCCTGCCCAGCCTCAGCAGCAAGT AGCGGCCTACCCTCAACAGAGCTATTCTCAACCAACTGCGGCCGCAGCAGTCCCGCCGCCTGTTCAGCAGCCAGCTGCAGTTCCACAGCCCTACTACGGG GGAAGCTATTACTAA
AA sequence Show only first row Show all	>Lus10022874 pacid=23159982 polypeptide=Lus10022874 locus=Lus10022874.g ID=Lus10022874.BGIv1.0 annot-version=v1.0 MADSDAAVSGSATVTEYASAGFSNTIPSSDAYAAGTAEAYGVNAAGGSAYGANSDSVMHDAHGNAYDAKTVAAENAAAPQPPTYSSANGNIGSAGETVAS VENGGSAEDASASAMKQQLLDGSVPASSPEEDRLWNIVRANSLDFDAWTALIDETEKVAWDKIRKIRAVYDAFLAEFPLCYGYWKKYADHEARLGDMDKV VEVYERAVLGVTYSVDIWLHYCTFAISTYGDPETIRRLFERGLTYVGTDYLSHPLWDKYIEYEEMHSEWPRVATIYTRILDIPNKRLDEYFNRFKEFAAS RPLSELRSAEENPAPPENGDQASEEMVRPEDSELSTKPASPCSEAEELEKYTAVREELYKKAKEFDSKICDFENAIRRPYFHVRPLNVAELENWHNYLDF MEAQNDLNKVVKLYERCLIACANYPEYWMRYVLCMEACGSMDIADNALVRATERQPDIHLFAARFREQNADIPGARAAYQRVHAEITPGLLEAIIKHANM EHRLGNLEDSFSLYEQAIAIEKGKEQSQVLPMLYAQYSRFVYMASGNAEKAREILEKAIDNVQFSKPLLEAFIQLESIMSLPKRIDHLDSLVDKFITPSS DSTASATDREELSCIFLEFLNVFGDVTTIKKAEDRHAKLFLPHRSKSELKKRHAEDYMSSDKTKVPKSYADPAAAAQSAMGGYPATAQNQWPAGYAAQPQ AWPQATQAPVQQWGPGYTQPAAYGAYGGAAYGGGYTAPAPQAPTSVPPTAAYGAYPPTYPAQPQQQVAAYPQQSYSQPTAAAAVPPPVQQPAAVPQPYYG GSYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10022874 [exp]	0	1
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	2.0	0.8474
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	2.6	0.8614
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	4.0	0.8591
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	6.5	0.8526
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	13.4	0.8429
AT4G21660			proline-rich spliceosome-assoc...		Lus10018475 [exp]	13.4	0.8288
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	14.1	0.8050
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	14.8	0.8099
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	17.0	0.8265
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	19.3	0.7965

Compare expression of checked genes

Lus10022874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.