Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024951 [exp] 583 / 0 ND 37 / 0.004 Lus10000264 [exp] 339 / 3e-118 AT4G21865 42 / 8e-05 unknown protein Lus10023724 [exp] 42 / 0.0002 AT4G21865 55 / 2e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172000 [exp] 51 / 1e-07 AT4G21865 59 / 2e-11 unknown protein Potri.014G192701 [exp] 47 / 4e-06 ND / Potri.010G065666 [exp] 44 / 6e-05 AT4G21865 50 / 8e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022875 pacid=23159909 polypeptide=Lus10022875 locus=Lus10022875.g ID=Lus10022875.BGIv1.0 annot-version=v1.0 ATGACTCCTCAGACTTGCATATTGTTTGCCCCATTTCATGGCGTACGGTGCCTGTGCGACAGACTCGTGGGTATGCCGCACTTAATGGCATGGGTGTCGT GGCTCCATAGACTTCTTTGGGTTTACAACACTTCAAACTCGTGGGCTATGGTCTTCCGGACAAGCTTGATTGAACGACTAGACTCGAATCAACCACCTCC GGAATTGTGTACCTGTATCAGTCCACAAGTGTATCAAAGGGTGAAGGTGAGGATGGAAATGCATGATGATCACAAGGAACATGGACTTCACACCCTTTTA TCTGACAGTGAAGAGGAAGTGATCAGGCCGTCTTTTGAAACATCCCTCGCAGCAGAGAAGGAGAACCACGGTGGCCGTGATTCTTCTTCTCCTTCTCCTC CGCCCCTAGTCGCCAGAGTTCTCTTGCAAACCGCCCCACAGTCTGTTTCTTCTAACAAAGGCAGCAAGAAACCCACTGTTAAAGCTAAAACTTGTGCTGT TCTACGTCCAAGAGCAGTGCTGTCAAGTCCTGATAATGACAATCTGATTGGGAAGAGGAACAGGCTGATCGACTCGAGAACGAGAACTGCTTCGCCTTCA TCTACCAACAGGAAGATCAACTTCTCTCATAGCAGCAGCAAGGTCACGCCCGTGGCTGCTCGGCCTAAGACTTGTACTACAAACTCTGCAAAACCATTGC AAGCTTCTAGTACAGGTCCTAGTACTAGAACTCCAACCGCGGTTCGAAGTAGCTATGCCTCTAAGCCAACTTCCATAAACAATGCTCTTGCCAAGCAGAA GAAGCATCAACTTGATAACAATTGCAGCAGCATCAGTCAGCTTAAAGGCAACAAACGAACAATGTACAAGGACTTGTAG
AA sequence Show only first row Show all	>Lus10022875 pacid=23159909 polypeptide=Lus10022875 locus=Lus10022875.g ID=Lus10022875.BGIv1.0 annot-version=v1.0 MTPQTCILFAPFHGVRCLCDRLVGMPHLMAWVSWLHRLLWVYNTSNSWAMVFRTSLIERLDSNQPPPELCTCISPQVYQRVKVRMEMHDDHKEHGLHTLL SDSEEEVIRPSFETSLAAEKENHGGRDSSSPSPPPLVARVLLQTAPQSVSSNKGSKKPTVKAKTCAVLRPRAVLSSPDNDNLIGKRNRLIDSRTRTASPS STNRKINFSHSSSKVTPVAARPKTCTTNSAKPLQASSTGPSTRTPTAVRSSYASKPTSINNALAKQKKHQLDNNCSSISQLKGNKRTMYKDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022875 [exp]	0	1
					Lus10024951 [exp]	1.0	0.9560
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	2.8	0.9180
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Lus10031192 [exp]	6.0	0.8473
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	6.2	0.8915
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	7.7	0.8677
AT1G58360		NAT2, AAP1	NEUTRAL AMINO ACID TRANSPORTER...		Lus10033759 [exp]	8.7	0.8213
AT3G23870			Protein of unknown function (D...		Lus10016636 [exp]	8.9	0.8208
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	11.6	0.8654
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10034567 [exp]	13.0	0.8652
AT4G21865			unknown protein		Lus10000264 [exp]	13.1	0.7010

Compare expression of checked genes

Lus10022875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.