Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17940 122 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G20190 120 / 8e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04530 109 / 3e-27 TPR4 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80130 106 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G32340 100 / 2e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29670 79 / 5e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G07280 76 / 4e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G47080 62 / 2e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024949 [exp] 498 / 3e-177 AT4G17940 125 / 8e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023721 [exp] 153 / 2e-42 AT1G04530 171 / 4e-49 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014468 [exp] 153 / 2e-42 AT1G04530 177 / 1e-51 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000257 [exp] 149 / 1e-40 AT1G04530 179 / 3e-52 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030103 [exp] 126 / 1e-33 AT5G20190 179 / 1e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002166 [exp] 124 / 4e-33 AT5G20190 192 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002013 [exp] 102 / 5e-25 AT4G32340 152 / 5e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043266 [exp] 101 / 5e-25 AT5G20190 162 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019409 [exp] 100 / 1e-24 AT5G20190 164 / 1e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256900 [exp] 202 / 6e-62 AT4G17940 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G065400 [exp] 147 / 1e-40 AT1G04530 160 / 5e-46 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G172200 [exp] 148 / 2e-40 AT1G04530 137 / 1e-36 tetratricopeptide repeat 4, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130100 [exp] 122 / 2e-32 AT5G20190 180 / 5e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G130300 [exp] 121 / 7e-32 AT5G20190 166 / 2e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G140500 [exp] 119 / 2e-31 AT4G17940 196 / 9e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G068200 [exp] 110 / 9e-28 AT5G20190 167 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G254300 [exp] 101 / 6e-25 AT4G32340 157 / 2e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G250100 [exp] 77 / 2e-15 AT2G29670 499 / 5e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044200 [exp] 72 / 2e-13 AT2G29670 484 / 5e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022877 pacid=23159938 polypeptide=Lus10022877 locus=Lus10022877.g ID=Lus10022877.BGIv1.0 annot-version=v1.0 ATGCTGCTACGTAGCTCTTCGACTCCGATTCTGGGATCTCTGATTCCATCGTTCAACGAAGGGACACTCAACAATCACCATCACCATGAGAGTGGTAGCA GTAGTCCTAGTCTGTTCAAGCACCACCACCAATCCTTCGGTAATGGCGGCGGGTTTCGCCGCGTGAGGTCTGATGGGAACTTGGAAGCACTCGCGGCTTA CGACTGTGGTGGCGCCGGGAAAGACGAATCTCACACGAATCATCTCCCTCCAAGGTTCCCGACTCGGATGCACACCAGGTGTTCGACGTTGGACACGATC CCTTCTTTCTCGCTTTCCAGCTCTGGAACCCGACAAGAAGAGGATCTGGAGGAGGAAGGCGATGACGAGGAGGAGGAGGAGGAGGATGGTGTGGCAACTG GTCGTGCTAATTCAGGGTTGATTGGTGATTTGAAGGTGAATGCTATGGTGGGGAGTATTGGTTATGGTAGGGATGAGATGCATATTGCTAATGGTCTTGG GGTTCAGCTGATTGCTAGCTACCATGGCGGTGAAGGTGGTGGTGGCCGTAAGGGTGGAAATGGCGGCCTTGGAGGTGGAGGAGGAGGTTATAATCCGGCT GACGGAGAAGGTGGAGATATGCAAGGGACGGAGGAGTACTACAAGAGGATGGTGATGGAGAACCCTGGAGACTCTTTGTTCTTGAGGAACTATGCTCACT TCTTGCATCAGACGAAGAAAGAACTGAAGGGAGCAGAGGAGTATTACTCGCGAGCGATCTTGGTCGATCCAAGCGACGGAGATATCCTTTCGCAGTACGC AAAGTTGGTATGGGAGCTTCACCGTGATGAGGACAGAGCCTCTGCTTACTTTGAGCGTTCGGTTCAAGCTTCTCCTCACAATTGCCATGTACATGCAGCG TATGCGAGCTTTCTGTGGGAAGTAGATCAAGATGATGTGCCTGTAGAGTTGGATGCGATCTCCATGCACCAGCATTACCCCAAGGGCTCCATGGCATCTG CAGGAGCTTAA
AA sequence Show only first row Show all	>Lus10022877 pacid=23159938 polypeptide=Lus10022877 locus=Lus10022877.g ID=Lus10022877.BGIv1.0 annot-version=v1.0 MLLRSSSTPILGSLIPSFNEGTLNNHHHHESGSSSPSLFKHHHQSFGNGGGFRRVRSDGNLEALAAYDCGGAGKDESHTNHLPPRFPTRMHTRCSTLDTI PSFSLSSSGTRQEEDLEEEGDDEEEEEEDGVATGRANSGLIGDLKVNAMVGSIGYGRDEMHIANGLGVQLIASYHGGEGGGGRKGGNGGLGGGGGGYNPA DGEGGDMQGTEEYYKRMVMENPGDSLFLRNYAHFLHQTKKELKGAEEYYSRAILVDPSDGDILSQYAKLVWELHRDEDRASAYFERSVQASPHNCHVHAA YASFLWEVDQDDVPVELDAISMHQHYPKGSMASAGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17940			Tetratricopeptide repeat (TPR)...		Lus10022877 [exp]	0	1
AT3G08870			Concanavalin A-like lectin pro...		Lus10012509 [exp]	5.5	0.7965
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029267 [exp]	6.3	0.8003
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	6.3	0.8015
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10032764 [exp]	12.0	0.7534
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10035764 [exp]	17.9	0.7645
AT4G32020			unknown protein		Lus10001940 [exp]	19.3	0.7816
AT5G15710			Galactose oxidase/kelch repeat...		Lus10031955 [exp]	20.7	0.7389
AT3G16190			Isochorismatase family protein...		Lus10006833 [exp]	21.6	0.7621
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007317 [exp]	23.0	0.7561
					Lus10018622 [exp]	23.5	0.7645

Compare expression of checked genes

Lus10022877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.