Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43990 110 / 2e-26 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 68 / 3e-12 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024947 [exp] 452 / 1e-160 AT5G43990 100 / 4e-23 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10022879 [exp] 297 / 3e-94 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024946 [exp] 277 / 6e-87 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10040211 [exp] 44 / 0.0001 AT2G40020 57 / 1e-09 Nucleolar histone methyltransferase-related protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257400 [exp] 147 / 5e-39 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.014G192500 [exp] 107 / 1e-25 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.013G048100 [exp] 73 / 6e-14 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.009G138600 [exp] 53 / 1e-07 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF10440 [flax] [poplar] WIYLD Ubiquitin-binding WIYLD domain
Representative CDS sequence Show only first row Show all	>Lus10022878 pacid=23159912 polypeptide=Lus10022878 locus=Lus10022878.g ID=Lus10022878.BGIv1.0 annot-version=v1.0 ATGCCGCCAAATCCCAGAGTGGGGAAGGCCTTCAAGGCAATGACGGAGGTCGGGTTCGATGCAGATGTAGTGAAGACTGTATTGAAAAGACTTGGGAAGT TGTACAGAAAAAACTTCTCCTTCATTGAAGAAGATAACTACAAGGCTCTTGTTGATGCTATACTAGATGACATGGATGGAAAGGCACGGGCACCGGAGAA GGAGAAGGAGAAAACTGTTGATGAGGGAGATTTCGTTGAAGAACTGCAGCCATTGCTTAAACGTCCACGCCCTCAACATGTAAGAGACCAAGAAGGGTTA GCAGTTTCTCTTCAAGATTCTGATCCGAGAGATTCATCTAACGAACCAGTTACGAACGGGCTTCTTCGATCCGAGCAATCCTTGCAACAGGACGACGTAC TTGTAACCAAAGGGAAAGAGCCAATGCCATCTCATGCTTCTGTGAGAAATCGTAAGAGGCCTCTTGCTCGGAGAAGAGAACTCGCCTTACGGATAATTGA TCAACCAGCAAAGAGCAAGGCTGTGGATTCCTACTCCTTGATAGTACCTAAGGATGAGCCTCTCAACGAGCTTCCTCTTGCAGTTATAAGGCCAGATTGT AGTAATGAGAAATCGGCAGATGTCAGGGACACCGCAACTGAAGATCAAGCTGGTCAAGAAGGAAATGGTAAGCAGCCCGTTGTTGGGAGCAACAACAGCA ATGGCTTCTGTTCTGAGTTGGAAATTGCTTCATCCTCTTCAGGGGAGGTGAAGATATCTCTGAGCTTCCAACCTTTGCTTGGAAGGCCAACTTTTCAGAT GCCAGCTCTGGATGAAGTGTTGAGATCAGTGAAGGAGAGATGTTCCCAGCATGGTTTACTTGGTGAGAACTTTTCTGTCTTGCCAGTTATGAAAGAAATG TGTCAGTGCTTCTTGGAATTGGCGACTGATTCCGATAACGAACCGAGCAGAAGTATACGAGAAAGTGATGCAGCTAGGAGATGA
AA sequence Show only first row Show all	>Lus10022878 pacid=23159912 polypeptide=Lus10022878 locus=Lus10022878.g ID=Lus10022878.BGIv1.0 annot-version=v1.0 MPPNPRVGKAFKAMTEVGFDADVVKTVLKRLGKLYRKNFSFIEEDNYKALVDAILDDMDGKARAPEKEKEKTVDEGDFVEELQPLLKRPRPQHVRDQEGL AVSLQDSDPRDSSNEPVTNGLLRSEQSLQQDDVLVTKGKEPMPSHASVRNRKRPLARRRELALRIIDQPAKSKAVDSYSLIVPKDEPLNELPLAVIRPDC SNEKSADVRDTATEDQAGQEGNGKQPVVGSNNSNGFCSELEIASSSSGEVKISLSFQPLLGRPTFQMPALDEVLRSVKERCSQHGLLGENFSVLPVMKEM CQCFLELATDSDNEPSRSIRESDAARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	0	1
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Lus10012229 [exp]	1.0	0.8534
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	5.8	0.8405
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10035703 [exp]	9.0	0.7787
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	9.4	0.7976
					Lus10035486 [exp]	11.4	0.8159
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10005148 [exp]	11.5	0.7973
AT3G14980			Acyl-CoA N-acyltransferase wit...		Lus10026374 [exp]	11.8	0.7979
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10036074 [exp]	12.5	0.8072
AT2G40020			Nucleolar histone methyltransf...		Lus10040211 [exp]	14.0	0.7782
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	16.5	0.8150

Compare expression of checked genes

Lus10022878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.