Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43990 449 / 5e-147 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 440 / 2e-143 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1) AT3G04380 358 / 3e-115 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT2G23740 109 / 3e-24 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT1G73100 91 / 1e-18 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT2G35160 89 / 9e-18 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT3G03750 85 / 3e-17 SUVR3, SDG20 SET domain protein 20 (.1.2) AT5G13960 85 / 7e-17 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT5G04940 83 / 4e-16 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G22740 82 / 7e-16 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024946 [exp] 1256 / 0 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10012513 [exp] 330 / 9e-105 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10005476 [exp] 323 / 7e-102 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 313 / 2e-99 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022878 [exp] 262 / 1e-80 AT5G43990 110 / 2e-26 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024947 [exp] 263 / 2e-80 AT5G43990 100 / 4e-23 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10008198 [exp] 162 / 1e-45 AT3G04380 217 / 8e-69 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10027956 [exp] 154 / 2e-43 AT3G04380 226 / 3e-73 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10040150 [exp] 96 / 4e-20 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G192500 [exp] 674 / 0 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.002G257400 [exp] 653 / 0 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.013G048100 [exp] 447 / 5e-147 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.009G138600 [exp] 350 / 2e-110 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.005G129800 [exp] 102 / 6e-22 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.007G033000 [exp] 102 / 9e-22 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.003G083100 [exp] 99 / 4e-21 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.013G064600 [exp] 90 / 6e-19 AT3G03750 258 / 1e-83 SET domain protein 20 (.1.2) Potri.003G162801 [exp] 87 / 2e-17 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.001G036800 [exp] 87 / 2e-17 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif CL0214 [flax] [poplar] UBA PF10440 [flax] [poplar] WIYLD Ubiquitin-binding WIYLD domain CL0214 [flax] [poplar] PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10022879 pacid=23160017 polypeptide=Lus10022879 locus=Lus10022879.g ID=Lus10022879.BGIv1.0 annot-version=v1.0 ATGGCGCCGAATCCCAAAGTTGCGAAAGCCATCAAGGCAATGACAGATCTTGGATTTGAGAGAGATGCAGTGAAGCCTGTATTGAGAAACCTTCTGAAGC TGTACGATAAAAATTTTGCCTTGATTGAAGAGGATAATTACAGGGCTCTCGCCGATGCTGTGCTTGATGACATGGAGAAACAGGCACAAGCACCAGAGAA GGAAAAGGAGAAGACTGTTGATGAGAGAAATTCTGAGGAAGACGGTCATGAGGAAGAATCCCAACGGCCGCTTAAACGGCTACGCCCACACCGCTTGAGA GACCAAGACGGGTTAGTGTCCCCTTCATCTGGAAACCACAGTCCCCCTACCAATTGTAAGTTGCCAATCCAGCCAAAGTTGGAACAAGAAGACCCCCCTT CTGAAAATTCCTTCCAGCAGCTAACAAACAAGGAAAATGCACTAGTTTTAGCAGGCTCTCCGCGAGATCCTGTTACAAGTCCAGGCAGCCAGCCCTTGTC TGCTCGGAGAAACTCATCTCAGGAACCAGTTACGAATGGAACTGTTCTGTCTGAGCAATGTTCACCATGGGACCTACCTGTGAGCAAAGGGAAAGAGCCC ATGTCATCTCAAGTTTATGTGAGGGGTAAGACGCCTCTTGCTGGAACTGAGCTTGCCATACGGATTGATCAGCCACCAAAGAGAAAGGATGCTGGTTTGC ACTCCTTGATAGTACCTAAGGATGAGCCAATTACGGATGAGATGCCTCTCAACGAGCTTCCTCTTGCAGTTATGGGGCCAGATCCTAGCAATGAAAATTC CTCTGTTAGGGACATGATAACTGAAAATGAAGCTGGTCAAAATGGCAGAACTGATGAAGATGACAGTGCTCTAGTGACTTCAAAGAAGCAACGAGTTAGG GCTGATGTTGGAAGCAATAGCAGCGTGCTCTCTTCTGGCTTGGAAATTGCTTCATCCCCTTCAGGAGAGGTGAAGATATCTTTGAGCTTCCAACCTTTGC TTGGAAGGCCTAGTTTTCAGATGCCAAGTCTGAATCAACTGTTCAAAGCAGTGGAGGAGAGATGTTCCCAACATAATTTACATGATGAAAACTTTTCTGT CCAGCAAATTATGAAAGATATGTGTCAGTGCTTCTTGGAATTGGCAACTGATTCCTCTCATGAATCGCAGGAAAGGGTAAGCAATGAAACTCCATCTGAT GACTCGTTGAAGGACTCTAGAGCTTCAAATAAGCTATGTGTTTGGGGCAGTGCTGGAAATGGTGATGCCGCATCTGATTCATCCAGTCAAACTGTTCGTC TTGATATTCCGAAGTTGGCCAATACCATTGGTGTGCATGGAGCAAGATCGGTAAACCCTGGATCCTCCAGTTTGGCAATTGTTCCACAATGTCAGCTGGC TGCCGATGCGTTGAGGTCTCTTCATGACTTGAATGACATTGCTAAGGCAGAAGAATCTGTTGAGATTCCATGGTGTAATGATGTCAACAATGAGTACCCC CCATCCTTTCGCTATACACCGGGCAACCTCATTTTTCAAAATGCCCTTGTGAAGTTCACTCTTTCTCAGATCACTGCTGATAATTGTTGTACTTCATGTG TTGGGGACTGTCTTTCTTCTTCAAGTCCTTGTGTTTGTGTTGCTGAAACTCTCTATGGGTATGCTTACACGCCAGAGGGTCTACTCAAGGATGATTTCTT GCAATTGTGCATCTCCAAGACCAGGGATCCCCAACAACAAGACCTATCCTACTGTACGGATTGTCCATTGGAGAGATCCGCAAATGAAGAAATGATAGAC CCATGCAAAGGTCATTTGAAGAGAAAATTTATAAAAGAGTGTTGGAGAAAATGTGGCTGCCATAAGAACTGTGGAAATCGTGTAGTACAGCGAGGTATAA GGCGCAAGTTGCAGGTATTTTTTACATCTGATGGGAAGGGTTGGGGCCTTAGAACCCTAGAGAAGCTACCAAAAGGATCGTTTGTTTGCGAATACATTGG AGAGATCCTAACCGTCAAAGAATTGCAGCGAAGGACCACAAAACTGGCTGGGAGTGCCAAGATCGAGAACTCTGCTTCAGTTCAGTTGGATGCATATTGG AACCCAAGAGGGGCTCTTAAGGACGAAGAGTATCTGTGTCTGGACGCAACGTTCTATGGTAATGTTGCCAGGTTTATAAACCACAGGTGCCGCGATGCCA ATTTAATTGAGATCCCAGTCAAGATTGATACCCCAGAGCGCCATTATTACCATGATTACGGTATCGACTTTGATGACAATGATCAAGCTTTGAAGAGATT CGAGTGCAAGTGTGGCAGCAAGTTCTGCAGGAACATGAAGCGATCAAGTAGCCTCTGGTCAGCTGATGATCACGGGGAGTCGGGGACGAAGAATGGCAGT CGTTGCAATCTGTTCTTAGGGCTGTGA
AA sequence Show only first row Show all	>Lus10022879 pacid=23160017 polypeptide=Lus10022879 locus=Lus10022879.g ID=Lus10022879.BGIv1.0 annot-version=v1.0 MAPNPKVAKAIKAMTDLGFERDAVKPVLRNLLKLYDKNFALIEEDNYRALADAVLDDMEKQAQAPEKEKEKTVDERNSEEDGHEEESQRPLKRLRPHRLR DQDGLVSPSSGNHSPPTNCKLPIQPKLEQEDPPSENSFQQLTNKENALVLAGSPRDPVTSPGSQPLSARRNSSQEPVTNGTVLSEQCSPWDLPVSKGKEP MSSQVYVRGKTPLAGTELAIRIDQPPKRKDAGLHSLIVPKDEPITDEMPLNELPLAVMGPDPSNENSSVRDMITENEAGQNGRTDEDDSALVTSKKQRVR ADVGSNSSVLSSGLEIASSPSGEVKISLSFQPLLGRPSFQMPSLNQLFKAVEERCSQHNLHDENFSVQQIMKDMCQCFLELATDSSHESQERVSNETPSD DSLKDSRASNKLCVWGSAGNGDAASDSSSQTVRLDIPKLANTIGVHGARSVNPGSSSLAIVPQCQLAADALRSLHDLNDIAKAEESVEIPWCNDVNNEYP PSFRYTPGNLIFQNALVKFTLSQITADNCCTSCVGDCLSSSSPCVCVAETLYGYAYTPEGLLKDDFLQLCISKTRDPQQQDLSYCTDCPLERSANEEMID PCKGHLKRKFIKECWRKCGCHKNCGNRVVQRGIRRKLQVFFTSDGKGWGLRTLEKLPKGSFVCEYIGEILTVKELQRRTTKLAGSAKIENSASVQLDAYW NPRGALKDEEYLCLDATFYGNVARFINHRCRDANLIEIPVKIDTPERHYYHDYGIDFDDNDQALKRFECKCGSKFCRNMKRSSSLWSADDHGESGTKNGS RCNLFLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	0	1
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	1.0	0.9274
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	2.8	0.9032
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	3.2	0.9131
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	3.7	0.8896
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	4.9	0.8818
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	5.2	0.9096
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Lus10006339 [exp]	5.2	0.8692
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	9.5	0.8811
AT2G34190			Xanthine/uracil permease famil...		Lus10007289 [exp]	10.0	0.8695
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041333 [exp]	10.2	0.8785

Compare expression of checked genes

Lus10022879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.