Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025970 [exp] 91 / 9e-22 AT1G27760 113 / 3e-27 SALT-TOLERANCE 32, interferon-related developmental regulator family protein / IFRD protein family (.1.2.3) Lus10024945 [exp] 0 / 1 AT5G65380 651 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022880 pacid=23159963 polypeptide=Lus10022880 locus=Lus10022880.g ID=Lus10022880.BGIv1.0 annot-version=v1.0 ATGGAAGCAACCAACAACAAAGAAGAAGAGGAGGGCAACAAGACGACCACGAGGCTGGAATTCATCGCAAAAAGCTTCAAAGAAGGATTCAAGGGGATGG AGATGAGGACATGGGTCGGGAGACTCCAACTGACGTTTCTCGAGAGGTTCCTCGGGGAAGAGGCGTTTGCAGAGCACGTTAAGGTGAACAAGCAGCTGCA GAGAATGTTTAAGGTGGACAACAATGTGAAGGTGGCGGCGACTGAGAAACAAGTGATGGAGGCTGATAGGGAAGATGTGAAGACTCGTTTCTACAAGCCG AAACACAAGTGCATGTTTGTCGATAGCTCACATTATTTCACGGAGACCAAAGGAAGGCAAATCCACAGGAAGCTCACTAATTCACCCAGTTCATGGTGGA GCAAGGTCGAGACTCAGCACCGTAAGCATCAACGCATCATAGCATCCATCTACCCCTGCAAGAACGTGTGGCAATACTCTGACTGTCACTTGTACTAG
AA sequence Show only first row Show all	>Lus10022880 pacid=23159963 polypeptide=Lus10022880 locus=Lus10022880.g ID=Lus10022880.BGIv1.0 annot-version=v1.0 MEATNNKEEEEGNKTTTRLEFIAKSFKEGFKGMEMRTWVGRLQLTFLERFLGEEAFAEHVKVNKQLQRMFKVDNNVKVAATEKQVMEADREDVKTRFYKP KHKCMFVDSSHYFTETKGRQIHRKLTNSPSSWWSKVETQHRKHQRIIASIYPCKNVWQYSDCHLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022880 [exp]	0	1
					Lus10016269 [exp]	1.0	0.8828
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Lus10007891 [exp]	1.7	0.8747
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	2.0	0.8776
					Lus10009774 [exp]	2.0	0.8509
AT4G34750			SAUR-like auxin-responsive pro...		Lus10021130 [exp]	4.0	0.8134
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Lus10028202 [exp]	6.2	0.7745
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	7.3	0.8356
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10034436 [exp]	7.9	0.7833
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	8.4	0.8403
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	10.5	0.8295

Compare expression of checked genes

Lus10022880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.