Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 598 / 0 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 523 / 0 BGLU15 beta glucosidase 15 (.1) AT5G44640 520 / 0 BGLU13 beta glucosidase 13 (.1) AT3G60130 518 / 1e-180 BGLU16 beta glucosidase 16 (.1.2.3) AT5G42260 510 / 1e-177 BGLU12 beta glucosidase 12 (.1) AT3G60140 488 / 4e-168 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT2G25630 474 / 8e-164 BGLU14 beta glucosidase 14 (.1) AT5G54570 464 / 3e-159 BGLU41 beta glucosidase 41 (.1) AT5G24550 463 / 7e-159 BGLU32 beta glucosidase 32 (.1) AT1G26560 460 / 3e-158 BGLU40 beta glucosidase 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024941 [exp] 1051 / 0 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 593 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10019531 [exp] 585 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 557 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 552 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031808 [exp] 550 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 548 / 0 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 538 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10024065 [exp] 518 / 1e-180 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227200 [exp] 610 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227300 [exp] 608 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G015100 [exp] 560 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 547 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 545 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 533 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G227400 [exp] 530 / 0 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 520 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.002G219600 [exp] 510 / 1e-177 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222800 [exp] 509 / 2e-177 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10022883 pacid=23160004 polypeptide=Lus10022883 locus=Lus10022883.g ID=Lus10022883.BGIv1.0 annot-version=v1.0 ATGGATATGAAAAAGAGGCATTATTGTTTACTGGGCAGACCTGCTATTATTCCCTGCTGTATACTGTTTTTCCTGCAGTTGAGCCAATTTTCAGCCTTTG ATGTTGTTGATGACGAGTACCCATCCTCACTCCTCAATCGAAGTAGTTTTCCAGCTGGTTTCATCTTTGGAGCTTCGTCCAGTGCTTACCAATACGAAGG AGCATCCTTCGTAGATGGAAAAGGAATAAGCAACTGGGATGTTTTCGTCAGAGAGCAACCAGAGAAGATATTGGATCATACTACTGGAGATGTAGCTGAA GATTTTTACAGTCGTTATAAGGAGGACGTCAAGCTGATGAAGGAAATCGGTTTGGATGCCTTCCGGTTCTCTATCGCATGGTCGCGTGTTATTCCTCGTG GGAAAATCAGCGAGGGGATCAATCACCTTGGTGTTGATTTCTACAACAACCTCATTGATGAGCTTCTGCTGAATGGTATACAGCCTCAAGCGACATTGAT GCATTGGGATCTTCCGCAGGCTCTTGAAGACGAGTATGGTGGATTCCTAAGCTCTAAGATTGTGGATGATTTTCGTGACTATGCGGATTTCTGCTTCGAG CAATTCGGCGATAGGGTGAAGAACTGGATTACTGTGAACGAGCCAAACTCGATTGCCTCAAAAGGATACGAGCAGGGCACGAATTCGCCTGGTCGATGCT CTAGTTATGTGGCAAATTGTACGGATGGGAACTCTGCCACGGAGCCGTACATTGTGCTTCACAACATTCTTCTTTCTCATGCAGCTGCTTCATATGTGTA CAGAAGAAAGTACAAGGCTTCTCAGAAGGGGATGCTAGGTATGTCGATATCGACTAGATGGTATGTCCCCAAGTACCCAACAACTGAATGCAGAAAGGCT GCCTCCAGAGCTCTAGATTTCGGTTTCGCATGGATGGCTCGTCCAGTGGTGCATGGTGACTATCCTGAATCGATGAAAGCGCTGGTCAGTGACAGGCTAC CGAAGTTCACAAAAGAACAGACGCAGATGCTGAAAGGCTCTGTTGATTTCCTTGGAGTGAATTACTACTCAGCATATTATGCGGAAGATGTTCCATATTC GAGCATCAATCCGAGTTATACAACAGATAGCCTTGTCAATCTCACAATGTACAAGAATGGCATCCCCATAGGCCAGCCGACTGCTTGTGACTGGCTCTAT ATCTATCCGGAAGGACTGCTCGAAATCTTGGTATACGTGAAGAACGAGTACAATATTCCGGTATTCTTGACCGAAAACGGGGTGGCTGATCTAAGTAACA ACTCACTGCCTCTGAATGATGCCCTGGACGACAACCTGAGGATCAAATTCCACTTCCTTCACATTAAATTTCTACTAGAATCTGTCAAGGCTGGAGTTGA TGTGAAAGGGTACACGTTGTGGTCGTTTCTCGATAATTTCGAGTGGGAACTTGGCTACACTGTCCGTTTCGGTATCACCTTTGTAGACTTCGAGAATGAT CTGAAAAGATACCCAAAACGTTCTGCACTTTGGTTCAGAGATTTTCTACTGAAGCAAGAGAATGGTACTACATTGTTGAACCCAGACATGTAA
AA sequence Show only first row Show all	>Lus10022883 pacid=23160004 polypeptide=Lus10022883 locus=Lus10022883.g ID=Lus10022883.BGIv1.0 annot-version=v1.0 MDMKKRHYCLLGRPAIIPCCILFFLQLSQFSAFDVVDDEYPSSLLNRSSFPAGFIFGASSSAYQYEGASFVDGKGISNWDVFVREQPEKILDHTTGDVAE DFYSRYKEDVKLMKEIGLDAFRFSIAWSRVIPRGKISEGINHLGVDFYNNLIDELLLNGIQPQATLMHWDLPQALEDEYGGFLSSKIVDDFRDYADFCFE QFGDRVKNWITVNEPNSIASKGYEQGTNSPGRCSSYVANCTDGNSATEPYIVLHNILLSHAAASYVYRRKYKASQKGMLGMSISTRWYVPKYPTTECRKA ASRALDFGFAWMARPVVHGDYPESMKALVSDRLPKFTKEQTQMLKGSVDFLGVNYYSAYYAEDVPYSSINPSYTTDSLVNLTMYKNGIPIGQPTACDWLY IYPEGLLEILVYVKNEYNIPVFLTENGVADLSNNSLPLNDALDDNLRIKFHFLHIKFLLESVKAGVDVKGYTLWSFLDNFEWELGYTVRFGITFVDFEND LKRYPKRSALWFRDFLLKQENGTTLLNPDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	0	1
AT2G42760			unknown protein		Lus10005429 [exp]	1.0	0.9471
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	2.0	0.9381
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027394 [exp]	2.2	0.9274
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	2.8	0.9275
					Lus10017966 [exp]	3.0	0.9357
AT4G36890		IRX14	irregular xylem 14, Nucleotide...		Lus10033785 [exp]	4.2	0.9215
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	5.3	0.9003
					Lus10007009 [exp]	6.0	0.9184
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031677 [exp]	7.0	0.9206
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039550 [exp]	7.4	0.9088

Compare expression of checked genes

Lus10022883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.