Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024939 [exp] 82 / 9e-23 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022884 pacid=23160021 polypeptide=Lus10022884 locus=Lus10022884.g ID=Lus10022884.BGIv1.0 annot-version=v1.0 ATGAAGATAGCAGTGCCTCGCCATTTGTTCTCTGTTGCCAATGAATACTTGAGTGGAATTACGGTGGTTTGCATGGTGGTGGTGATGTGGTTGTGTATGG GATCTTCTTACTGCTTGTTACTTGCTAGTAGCCAGAATTGTTCTCTGGTTTCAGTGGATTATGAGCACTGTTTGAAATATTGTTACTCGTCGTTGAGAGG AAGTAACTAA
AA sequence Show only first row Show all	>Lus10022884 pacid=23160021 polypeptide=Lus10022884 locus=Lus10022884.g ID=Lus10022884.BGIv1.0 annot-version=v1.0 MKIAVPRHLFSVANEYLSGITVVCMVVVMWLCMGSSYCLLLASSQNCSLVSVDYEHCLKYCYSSLRGSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022884 [exp]	0	1
					Lus10011723 [exp]	7.3	0.8194
					Lus10027664 [exp]	10.9	0.8036
AT5G04480			UDP-Glycosyltransferase superf...		Lus10017452 [exp]	12.5	0.7957
					Lus10024552 [exp]	13.3	0.8030
					Lus10005609 [exp]	14.3	0.7999
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10021707 [exp]	17.3	0.7981
AT1G13940			Plant protein of unknown funct...		Lus10026640 [exp]	19.0	0.7550
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10002389 [exp]	20.7	0.7894
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10018918 [exp]	20.8	0.7868
AT3G23880			F-box and associated interacti...		Lus10010910 [exp]	26.3	0.7796

Compare expression of checked genes

Lus10022884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.