Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24190 51 / 1e-06 SNL3, AtSin3 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) AT3G28870 48 / 7e-06 unknown protein AT1G70060 46 / 4e-05 SNL4 SIN3-like 4 (.1) AT3G01320 43 / 0.0005 SNL1 SIN3-like 1 (.1.2) AT1G24200 41 / 0.0006 Paired amphipathic helix (PAH2) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020323 [exp] 238 / 2e-72 AT3G01320 56 / 5e-08 SIN3-like 1 (.1.2) Lus10005670 [exp] 157 / 3e-45 AT1G24190 39 / 0.003 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Lus10032181 [exp] 54 / 2e-07 AT5G15020 1362 / 0.0 SIN3-like 2 (.1.2) Lus10030817 [exp] 52 / 8e-07 AT1G70060 1426 / 0.0 SIN3-like 4 (.1) Lus10014504 [exp] 51 / 1e-06 AT3G01320 897 / 0.0 SIN3-like 1 (.1.2) Lus10013293 [exp] 48 / 1e-05 AT1G70060 1454 / 0.0 SIN3-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G316300 [exp] 59 / 8e-10 AT3G01320 86 / 1e-19 SIN3-like 1 (.1.2) Potri.001G350200 [exp] 60 / 3e-09 AT5G15020 1391 / 0.0 SIN3-like 2 (.1.2) Potri.008G192200 [exp] 54 / 2e-07 AT1G24190 1330 / 0.0 ARABIDOPSIS THALIANA SIN3 HOMOLOG, SIN3-like 3 (.1.2) Potri.010G038700 [exp] 53 / 3e-07 AT1G70060 1396 / 0.0 SIN3-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02671 [flax] [poplar] PAH Paired amphipathic helix repeat
Representative CDS sequence Show only first row Show all	>Lus10022887 pacid=23159892 polypeptide=Lus10022887 locus=Lus10022887.g ID=Lus10022887.BGIv1.0 annot-version=v1.0 ATGGAGCGACTTCAACCACCGTGTACACCTGATCCGTCGTTTTCAATGGAGGGTTTCCCCGTCGATATGGTATACGCCGCAAGGACCCTGATTCGCGAAA CCAAAAACCGACTCGACCCGGCAAAGATCCAACATTTCAGCGACACCCTGCCTTATCTCGCCCGCCGTGCTGCCAGCAAGTTACCGGACCACACAGCAAT GCTCGTGGAGGAAATACTCGACGGCCAAACCGACTTGATCGAGAAGTTCAGTGCCTTCTTGCTGGAGGAGAAACACCGGGTCAAAATCAAGAGGAAGTCC CCGCAGCCACCGGTGTCGGAGATCATTGTCCCGGAAGCATGTTCAAAGGCCGTCGACTTCGTAAACCTGTTAGGGAGGCGGGACAAGAAGCTGCTGAGAT CGGTATTGGAAGTCTTTGATTCTTGCAGCAGGGAGGAGATTGGTAAGGACGATGTTGTTCGGGAAATTGTGGAGTTGCTGAAAGGAGAGCCCCAATTGCT TCAGGAATTCACGACTTTTTTACCGGTGACAGAAGCGACTCCGATCTCTGTAATCCCTTATGTGATGGAAGAAGGAGAAATTAGGGATTCGGAGGATGAA GAACAGAGGAATCCAAAGAGGGAAAAATTGAGTCAGAACCCTAATCACAATTCCGAAGAACATAGAAAACCAGAAAAGAGGGCAGAATCGAGTGAGAATA ACCCTAATAATTACGAAATTCTCGTAAACAAAATCCTCAATTCGGCCATGGTTAATCTTGAGGAGCAGGTAACGCTCTCGTGGCCGAGTTTGTACCGATA CTCGAAGGGACGGAGCTTCAATCCGGCGGATCTCTCCGTGGAATTCCAGACGCTACTGTTCCTGCTGAAGCCGTTCGAGAATGAACGGGAGAAGAAGAAA CAAGGATCGGATCAAAAGTTGGATGACAGTTCGAGAGGGAGAAGGACAAGGCAGGATCGAGAATCGGCGGAGACGATGATGAACGAGATAGAGGAAGAAC GGTACAATCTGGATATGATGGAGAGATACGTGATTTCAGCGAAGGATTGCTTGGAAGGGACCAAGGAGGAGCTAGGGGAGATGCAACTGAGGAAATGTGT GGAAGCGATGTACGATGCGACGGAGGAAGTGGTGGAAATGGCGACGGAGGATCCGGAGTTCTTGAGCCGGATCGCGAAGAAGCGGGTGCATCAGAAGCTC GAGGAGCTTAGAGGAGTTCGGGAGAGGCTTACGCAAATTTGGAAACCAGCCATTGATGAGCACTGTAAATGCATTTAA
AA sequence Show only first row Show all	>Lus10022887 pacid=23159892 polypeptide=Lus10022887 locus=Lus10022887.g ID=Lus10022887.BGIv1.0 annot-version=v1.0 MERLQPPCTPDPSFSMEGFPVDMVYAARTLIRETKNRLDPAKIQHFSDTLPYLARRAASKLPDHTAMLVEEILDGQTDLIEKFSAFLLEEKHRVKIKRKS PQPPVSEIIVPEACSKAVDFVNLLGRRDKKLLRSVLEVFDSCSREEIGKDDVVREIVELLKGEPQLLQEFTTFLPVTEATPISVIPYVMEEGEIRDSEDE EQRNPKREKLSQNPNHNSEEHRKPEKRAESSENNPNNYEILVNKILNSAMVNLEEQVTLSWPSLYRYSKGRSFNPADLSVEFQTLLFLLKPFENEREKKK QGSDQKLDDSSRGRRTRQDRESAETMMNEIEEERYNLDMMERYVISAKDCLEGTKEELGEMQLRKCVEAMYDATEEVVEMATEDPEFLSRIAKKRVHQKL EELRGVRERLTQIWKPAIDEHCKCI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10022887 [exp]	0	1
					Lus10020623 [exp]	1.7	0.7436
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	10.7	0.7725
AT2G19130			S-locus lectin protein kinase ...		Lus10012955 [exp]	14.2	0.7644
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10034397 [exp]	14.3	0.6762
AT4G34660			SH3 domain-containing protein ...		Lus10028785 [exp]	18.3	0.6419
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	18.4	0.7293
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	20.4	0.6598
AT3G55820			Fasciclin-like arabinogalactan...		Lus10040220 [exp]	23.2	0.6387
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10007218 [exp]	24.4	0.6258
AT4G25030			unknown protein		Lus10034730 [exp]	25.0	0.7134

Compare expression of checked genes

Lus10022887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.