Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020748 [exp] 172 / 4e-51 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10002239 [exp] 136 / 3e-37 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 134 / 4e-36 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024695 [exp] 134 / 4e-36 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10042477 [exp] 133 / 7e-36 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10023425 [exp] 130 / 2e-35 AT5G56440 61 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 124 / 7e-33 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10024696 [exp] 120 / 3e-31 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2) Lus10007058 [exp] 120 / 4e-31 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 71 / 1e-13 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.015G011200 [exp] 58 / 2e-09 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 52 / 2e-07 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G104300 [exp] 42 / 0.0003 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 42 / 0.0005 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 41 / 0.0009 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022888 pacid=23159998 polypeptide=Lus10022888 locus=Lus10022888.g ID=Lus10022888.BGIv1.0 annot-version=v1.0 ATGATCTCAAACGCAATAACGAATCAGCAGTCTCCCCCAGGTTTCACAAGGTACGTAGAAAAGGTTTTGTCGCTCCGCTATCAATTGAGTCTTAGAAAGG TCATCTACCATGACGGTATAGAGGAATCGGAAGCGGAACTAGAAGATAGCTTGCTTGAAAGGGTCATCAGATATGCCTTGTCCCATGAAACTCAACATTT AGTAATTCACCTACCATATCACGGTCATAATCATCCATCGCTGTACCCGTCGGCCGATTTGCTTGGATTCAACTCTGATTGCAGTCTGAAAACTTTAGAA CTCGGCGCATTTAGCTTCAGTAATAGATTTCGATGCTCTAGTTTCCTGGTGCTGGAAAAAATAGACTTGTTCGGCTGCACGTTCTTTGTTGGTCAGGATG ATGGTATCAATACCATCGACCCTTTTTCTAACCTCCCATGCCTGAAGGATTTGGTGCTGACTAATCTGCTCAGCATTAGTAGTAATGATCATACATTCTG GATATCTGGCCTCCAGCTGCTTACGCTCAGTCTCTCAGGCATTTATTTTCGCAAGATGGAAATACATGCACCGAAACTCTTCACTCTCGAGTATAATGAT AATCACCTTGTGGATTTCACAGAGCTGACTGTTCCTTCCCTTGATCATGCTGACATTCGGATTGAGTATGACGGCGGTGACTACAACAAGTACGACGATG GGAATCAATATACAAAGCAACTCATGATCCCTTTGTTCCACAGGATGAGTAATGCTTCATCTCTCGTGTTGTGTGTCATTGCCGCCGGGCTGCTTGGGGA TATCTCTGATTATCTTGATAATCAGCCCTCTCCATTTATGAGGTTGAAGTCCTTGATCATTGGCTCTATGTGGCCTAGCGATGATGTACCTTATGCAGTG GTCAACTACTTACTCAAAGGGTCTTCTAATGTGAAACCAGTTGTTAAGTTTACATCAGGTTAA
AA sequence Show only first row Show all	>Lus10022888 pacid=23159998 polypeptide=Lus10022888 locus=Lus10022888.g ID=Lus10022888.BGIv1.0 annot-version=v1.0 MISNAITNQQSPPGFTRYVEKVLSLRYQLSLRKVIYHDGIEESEAELEDSLLERVIRYALSHETQHLVIHLPYHGHNHPSLYPSADLLGFNSDCSLKTLE LGAFSFSNRFRCSSFLVLEKIDLFGCTFFVGQDDGINTIDPFSNLPCLKDLVLTNLLSISSNDHTFWISGLQLLTLSLSGIYFRKMEIHAPKLFTLEYND NHLVDFTELTVPSLDHADIRIEYDGGDYNKYDDGNQYTKQLMIPLFHRMSNASSLVLCVIAAGLLGDISDYLDNQPSPFMRLKSLIIGSMWPSDDVPYAV VNYLLKGSSNVKPVVKFTSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022888 [exp]	0	1
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	4.9	0.7655
AT1G35430			unknown protein		Lus10001289 [exp]	6.9	0.7460
AT3G10210			SEC14 cytosolic factor family ...		Lus10031044 [exp]	13.6	0.7465
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10027210 [exp]	33.0	0.7448
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	34.6	0.7384
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014461 [exp]	45.1	0.7301
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	48.2	0.7356
AT5G47810		PFK2	phosphofructokinase 2 (.1)		Lus10039992 [exp]	50.1	0.7171
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	55.3	0.7255
AT5G49550		BLOS2	BLOC subunit 2, unknown protei...		Lus10019163 [exp]	55.9	0.6977

Compare expression of checked genes

Lus10022888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.