Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14300 274 / 7e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 265 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 248 / 3e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 238 / 4e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 235 / 8e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 217 / 2e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G17640 181 / 2e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 169 / 8e-49 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 155 / 6e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 151 / 9e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024937 [exp] 462 / 7e-163 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 289 / 2e-94 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 282 / 9e-92 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032579 [exp] 244 / 3e-76 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 243 / 7e-76 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 236 / 2e-73 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 235 / 1e-72 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 233 / 1e-72 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 230 / 1e-72 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258600 [exp] 313 / 3e-104 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 305 / 4e-101 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 292 / 3e-95 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 291 / 7e-95 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G222400 [exp] 240 / 5e-75 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 240 / 6e-75 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 240 / 6e-75 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 240 / 8e-75 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 240 / 8e-75 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 237 / 7e-74 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10022889 pacid=23159925 polypeptide=Lus10022889 locus=Lus10022889.g ID=Lus10022889.BGIv1.0 annot-version=v1.0 ATGGATTCGGACGAAGGGAAGCTGTTCGTCGGTGGCGTATCGTGGGAGACGACGGAGGACACCCTCCGTGACTACTTCGCCAGCTACGGCGACGTCTCCC AGGTCGTCATCATGCGCGACAAGACCACCGGCCGCCCCCGCGGCTTCGGCTTCGTCGTCTTCTCTGATCCTGCTGTGCTCGATCACGTTCTCCACGAGTC CCACACCATCGATGGCCGTACCGTGGAAGCGAAACGGGCTTTATCTCGAGAGGAGCAGCAAACATCTTCTAGAACTGGGAATTCTAATCCTAGCAGGGGC TCTGGTGGCGACGGAGGAGGGAATTTCAAGACCAAAAAGATATTTGTAGGTGGGTTACCCCCAACACTTACTGAAGATGGGTTCCGAGGCTATTTCGAGA CTTATGGTCCTGTTGCTGACGTGGTAGTGATGTATGACCAGCATACTCAGAGGCCGCGTGGGTTTGGGTTCGTCACTTTTGAAGATGAAGAAGCAGTCGA CAGGGTACTCCACAAGACTTTCCATGAGTTGAATGGCAAGAGTGTCGAAGTAAAGCGTGCTCTTCCAAAAGACTCGAATCCTGGTGGCAACGGGCGCATT GCAGGCTACCAGGGTTACAGTGGTTCCGGTGCTAATGCAAGTAATGGAAGGATGGATGGAAACCGATACATGCAATCCCAAACATCTGCTGCTGGGTATG GGGCTTATTCTGGTTATGGTGCACCAAGCTACGGTTATGGAGCACCGAACTATGGTGGGTATGGCGCTTATGGTGTTGGTGCTGGATTTGGTGGTGGAAC TGGCGCATATGCCATCCGAGGTCAATGGGGCGGCCAAGCTCCAGCTAGCTACGGCGCTTTCGGCTACAACGCTGCAGCAGGAGGATATGGAGGAGCAGCA GGAGCACCGTGGAATGCTTCAGGCGGCGGTAACTATGGGGGAAGTGACGGGTCTTACTCAGTTGGGTACGGTGGTGAGCGTCCTGGAAATGCTCCGAGCA GCACTGGAAATGCAGGAGGCGGGATGGAGCATCAAGGAGGCGGCAACTATGGGGATCACAGTAATGGGAATGCAGGGTATGAACAACAAGAGAGCTGGGG ATCAGTTCCATCAGGTGGCTACAATGGTGGCCACTCGAGGCAAGCATCGTAA
AA sequence Show only first row Show all	>Lus10022889 pacid=23159925 polypeptide=Lus10022889 locus=Lus10022889.g ID=Lus10022889.BGIv1.0 annot-version=v1.0 MDSDEGKLFVGGVSWETTEDTLRDYFASYGDVSQVVIMRDKTTGRPRGFGFVVFSDPAVLDHVLHESHTIDGRTVEAKRALSREEQQTSSRTGNSNPSRG SGGDGGGNFKTKKIFVGGLPPTLTEDGFRGYFETYGPVADVVVMYDQHTQRPRGFGFVTFEDEEAVDRVLHKTFHELNGKSVEVKRALPKDSNPGGNGRI AGYQGYSGSGANASNGRMDGNRYMQSQTSAAGYGAYSGYGAPSYGYGAPNYGGYGAYGVGAGFGGGTGAYAIRGQWGGQAPASYGAFGYNAAAGGYGGAA GAPWNASGGGNYGGSDGSYSVGYGGERPGNAPSSTGNAGGGMEHQGGGNYGDHSNGNAGYEQQESWGSVPSGGYNGGHSRQAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10022889 [exp]	0	1
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	6.2	0.8432
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	6.9	0.8272
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	7.1	0.8401
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10024937 [exp]	10.1	0.7731
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	11.0	0.8354
AT3G06150			unknown protein		Lus10034027 [exp]	12.2	0.8221
AT3G27030			unknown protein		Lus10032030 [exp]	17.7	0.7677
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	18.8	0.8139
AT1G13380			Protein of unknown function (D...		Lus10041447 [exp]	19.1	0.7566
AT4G23930			Late embryogenesis abundant (L...		Lus10032397 [exp]	21.4	0.7655

Compare expression of checked genes

Lus10022889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.