Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61170 864 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 500 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 501 / 3e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 481 / 2e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 478 / 2e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 471 / 4e-154 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 466 / 2e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 456 / 1e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 453 / 7e-148 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 451 / 2e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024936 [exp] 1506 / 0 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 553 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 517 / 8e-171 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 515 / 5e-170 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 502 / 2e-166 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 494 / 1e-163 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 490 / 5e-162 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 476 / 7e-156 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021232 [exp] 458 / 6e-151 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155100 [exp] 1082 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 556 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 538 / 2e-177 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 528 / 5e-174 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 496 / 2e-165 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G191000 [exp] 484 / 8e-160 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 485 / 2e-159 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 484 / 8e-159 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G237100 [exp] 481 / 2e-158 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 478 / 2e-157 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022890 pacid=23159905 polypeptide=Lus10022890 locus=Lus10022890.g ID=Lus10022890.BGIv1.0 annot-version=v1.0 ATGCACAAATTACGAACAGTGCTTTCGTATTCAACGATTGAATCCAACAGGCGGCTGAATGGGTTGTCCAAGTTGGGACGCCTGGAAGAGGCACGCCAAC TGTTCGACGAAATGCCTGATAAGGATGAGTTCACTTGGAACACTATGGTTGCTGCTTATGCTAATTCAGGAAGGTTAACAGAAGCCAGGAAAGTCTTTCA TGACTGTCCCATCAAGAGTTCGATAACTTGGTCGGGTTTGATAGCTGGGTACTGTAGACATGGATGTGAAAGTGAAGCATTTGAGTTGTTTTCGGGGATG CATTTCGAAGGACAAAGGCCAACCCAGTATTCAATGGGGAGTGTTCTTAGGCTGTGTTCAACGACCACTTCTCTTCAAAGAGGACAACAGATTCATGGAT ATGCTTTGAAAACTGGAAACGATGTCGATGTTTTCGTTGCTACTGGCCTTGTGGATATGTACGCTAAGTGTATGTGCATTTCGGAAGCTGAACGTCTTTT CCGGATGGTGGCTGATGCCAAGAGTCATGCTACCTGGACTGCAATGCTTACAGGGTTTTCTCATAATGGGGACTGCTTCAAAGCCATAGACTTTTTTAGG CATATGAGATCCAAGGGAGTTGAGATCAACCAATTTACCTTCCCGTCCGTTTTGACAGCTTGTGCATCTGTTTTAGCTCGTGATTTCGGAGTTCAAGTGC ATGATTGCATAATAAAGAGTGGTTTTGGCGCTAACATATTTGTTCAGAGTTCCCTGGTTGATATGTATGCAAAATGCAGGGACTTAAACAGTGCAATGAA GATGCTGGAAAGCATGGAAATCGACGATCCTATTTCGTGGAATTCAATGATAGCCGGGTGCGTGAATGCTGGTTGTGAAGGTGAGGCTTTGAGCATGTTT CGGACAATGCATGATAAAAGTATAAAGATCGATCACTATACTTTCCCATCGGTGCTCAACTCTCTAGCATCTTCAAAAGATGTCCAGAATGCCAAGTGCG TCCACTGCTTGATTTTGAAAAGTGGATTTGGGGGATACCAGGTTGTAAATAATGCTCTTGTGGACGTGTATGCCAAACAAGGGAAAATGGATTTGGCGTT GGCCATATTCAACAATATGGAAGACAGAGACGTTGTCTCTTGGACGTCCTTGGTTGTAGGATATTCACACAATAGATCTTTTGAAGATTCTATAAAGCTA TTTTGTGAAATGAAAGTTACTGGGATACGGCTAGATGATCTTCTTGTTGCTAGCATTTTGAGTTCTTGTGCCGAACTAACTATTATGGAATTCGGGCAGC AAGTTCATGGTACACTTGTTAAATCTGGTCTCGAGTCATCTTTGTCGGTTGACAATTCTCTCGTAACTATGTATGCAAAGTGTGGCGCGATCCTCGATGC CAATCGTGTCTTTGACGCCATGAAGGCTCGGAATGTCATAAGTTGGACAGCACTGATAGTTGGATACGCACAAAATGGTAAAGGAATGTACTCTTTACTC TTGTATGAACAAATGCTTTCTGCTGGTATTGACCCGGATTATATTACATTCATTGGATTACTATTCGCCTGCAGTCATACTGGTTCTATTGAAAAGGGTC GCTCCTACTTTAATTCAATGGATAAGGTATATGGGATCCAACCAGGACCTGAGCATTACGCATGCATGATTGATCTTTTCGGCCGCTCAGGGAAACTTGG CGAGGCAAAGAAAATACTCGACCAAATGGGCATAGAACCAGATGCTACTGTGTGGAAGTCCCTTCTTGCAGCGTGTAGAGTGCATAAAGATTTGAAATTG GGAGAAAGGGCAGCTAATAACCTATTTGAATTGGAGCCAAAGAACAGTATGCCTTATGTAATGTTGTCAAACATGTACGCTGCTGCCGGTAGATGGGAAG ATGCCGCTAGAATTAGAAAGCTGATGAAGTCTAGAGGAATTAGTAAGGAGCCCGGGTCGAGCTGGACTCAAACAAATGGCAAAGTTTACATCTTTGTCTC TGAGGATAGAAGTCACCCTATGACGACTGAGATCTATTCGAAAGTTGATGAGATGATTGCACGAATCAAGGGAGCTGGCTACGTTCCGGACATGAATTTT GCGCTTCATGACATGGAAATGGAAGGGAAAGAGCTCGGACTTGCTTATCACAGCGAGAAATTGGCTGTTGCTTTCGGACTGCTATCTCTACCTCAGAGGT TGCCGCCTGCCTTGCAGTCCTGGGCTGGAAACGCTATCCCTGCAGCAGACTCAGAAGTTGAGTGGATTCGATTGATAAACGTTGTCGAGAAGTTGTGTAA CCGAAGCCACCAGGGGATAGAAGTTCATAATCTCCAAAGCGGATTGTGCACAAGAAAGTGA
AA sequence Show only first row Show all	>Lus10022890 pacid=23159905 polypeptide=Lus10022890 locus=Lus10022890.g ID=Lus10022890.BGIv1.0 annot-version=v1.0 MHKLRTVLSYSTIESNRRLNGLSKLGRLEEARQLFDEMPDKDEFTWNTMVAAYANSGRLTEARKVFHDCPIKSSITWSGLIAGYCRHGCESEAFELFSGM HFEGQRPTQYSMGSVLRLCSTTTSLQRGQQIHGYALKTGNDVDVFVATGLVDMYAKCMCISEAERLFRMVADAKSHATWTAMLTGFSHNGDCFKAIDFFR HMRSKGVEINQFTFPSVLTACASVLARDFGVQVHDCIIKSGFGANIFVQSSLVDMYAKCRDLNSAMKMLESMEIDDPISWNSMIAGCVNAGCEGEALSMF RTMHDKSIKIDHYTFPSVLNSLASSKDVQNAKCVHCLILKSGFGGYQVVNNALVDVYAKQGKMDLALAIFNNMEDRDVVSWTSLVVGYSHNRSFEDSIKL FCEMKVTGIRLDDLLVASILSSCAELTIMEFGQQVHGTLVKSGLESSLSVDNSLVTMYAKCGAILDANRVFDAMKARNVISWTALIVGYAQNGKGMYSLL LYEQMLSAGIDPDYITFIGLLFACSHTGSIEKGRSYFNSMDKVYGIQPGPEHYACMIDLFGRSGKLGEAKKILDQMGIEPDATVWKSLLAACRVHKDLKL GERAANNLFELEPKNSMPYVMLSNMYAAAGRWEDAARIRKLMKSRGISKEPGSSWTQTNGKVYIFVSEDRSHPMTTEIYSKVDEMIARIKGAGYVPDMNF ALHDMEMEGKELGLAYHSEKLAVAFGLLSLPQRLPPALQSWAGNAIPAADSEVEWIRLINVVEKLCNRSHQGIEVHNLQSGLCTRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61170			Tetratricopeptide repeat (TPR)...		Lus10022890 [exp]	0	1
AT3G55160			unknown protein		Lus10015366 [exp]	12.5	0.8783
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10024222 [exp]	16.9	0.8413
AT5G51660		CPSF160, ATCPSF...	cleavage and polyadenylation s...		Lus10031692 [exp]	20.7	0.8767
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	22.9	0.8734
AT3G11964			RNA binding;RNA binding (.1)		Lus10029327 [exp]	23.7	0.8718
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	27.4	0.8678
AT3G16260		TRZ4	tRNAse Z4 (.1)		Lus10025810 [exp]	31.2	0.8595
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	33.8	0.8437
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	33.9	0.8586
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	37.3	0.8673

Compare expression of checked genes

Lus10022890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.