Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 695 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 662 / 0 Major facilitator superfamily protein (.1) AT2G40460 574 / 0 Major facilitator superfamily protein (.1) AT3G54140 503 / 3e-173 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 481 / 1e-164 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 466 / 3e-158 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 462 / 5e-157 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 426 / 2e-143 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 426 / 1e-142 Major facilitator superfamily protein (.1) AT2G37900 410 / 9e-137 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024935 [exp] 1029 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 1013 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 796 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 792 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 756 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 750 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024933 [exp] 697 / 0 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 533 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 496 / 5e-170 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 834 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 796 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 751 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 742 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 569 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.009G042400 [exp] 506 / 4e-174 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 497 / 7e-171 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 493 / 6e-169 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 492 / 9e-169 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 486 / 1e-166 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10022891 pacid=23159988 polypeptide=Lus10022891 locus=Lus10022891.g ID=Lus10022891.BGIv1.0 annot-version=v1.0 ATGGAGAATCTTGCTTCACAAGAAAAGGGTGATGATGCCTACACTCAGGACGGGACTGTCAGCCTCCGAGGCAGTCCCGTCCTGAGATCGAAAACCGGGA GATGGAGAGCTTGCTCCTTCATTGTTGGGTATGAAGTGTTTGAAAGGATGGCTTACTATGGGATAGCAACAAACCTAGTGGTGTACTTGGGAGAAAGACT CCATGAAGGCACTGTTCAATCTTCTAACAACGTCACCAACTGGGCTGGTACTGTCTGGATTCTCCCCATTTTGGGTGCTTACGTCGCTGATGCTCACTTA GGCCGATTCTGGACCTTCGTCGTCGCCTCTTCCATCTATCTTTCCGGGATGATACTGCTAACCCTGGCGGTCACAATAACGGGCCTGAAACCTCCGACAT GTCCAGAGAGCGATCCAGGGTGTGACATCCAGCCCTCGTCCTTACAAAAGGGCATATTCTACTTTGCACTCTACATAATAGCGATCGGAACCGGTGGAAC CAAGCCGAACATTTCCACAATGGGGGCAGACCAGTTTGATGAGTTTGAGCCTAAGGAGAGAACTCACAAGCTATCCTTCTTCAACTGGTGGATGTTCAGC ATCTTCTTCGGCACGCTCTTCTCCAACACTTTCCTGATCTATCTCCAGGACCATGTCGGGTGGACGCTTGGCTATGGACTTCCCACTGCAGGGCTTGGGT TTTCCATAGTCGTATTCTTGATTGGGACTCCTTTGTATAGGCACAAGCTTCCTGCAGGAAGCCCTTTTACTAAAATGGCTCAAGTGCTTGTTGCTGCTGC TAGGAAATGGAACGTTGAGCTTCCTGATGATCCCAAACAGCTCTACGAACTTGGTGCTGATCAGTATGATAAGCTCGGGAAGTTCACAGTTGATCACACC CCTTCCCTGAGGTTTCTAGACAAAGCAGCAGCAAGAAGAGGGAAAAGCTCACCATGGAACCTAACACCAGTAACCCAAGTGGAAGAAACAAAGCAAATGC TAAAGATGCTCCCAATCTTAGCAATCACAATAATCCCAAGCGCCATAGTAGCCCAATCAGGAACCATGTTCATCAAACAAGGAGCAACAATGGACAGAAG CATGGGACCCAATTTCGAAATCCCAGCAGCTTGCCTAGCAGCATTCGTCACAATTTCAATGCTAATCAGCTTAGTAATCTACGACCGCTGGTTCGTGCCT TTCATCAAACACTTTACGGGCAATCCACGAGGGATCACACTACTCCAAAGAATGGGGATCGGACTAATCCTCCAGATCACGGTCATGGTCTCGGCCTGCC TAGCCGAGCGAAAAAGGCTCGAAACCGCAATCCAGCACAACAAATTGCAGAAACTTGACAGAGTTCCGCTTACAATTTTCATCCTGATGCCACAATTTGC TCTGCTCGGGGTGGCAGATTGCTTCATGGAAGTTGCGAAGCTAGAATTGTTCTATGATCAAGCTCCCGACGGGATGAAATCTCTAGGGACTTCTTACTTC ACTAGCAGCATTGGATTGGGGCAGTTCCTGAGTAGCTTCTTGGTGAGGCTTGTGGCGAATTTGAGTGCGAGGAATGGCAAAGGTTGGATATTGAACAATT TGAATGTATCGCATTTGGATTACTATTATGCATTGCTGGCGGGTTTGGCTTTGGTGAACTTGATTGGGTTCTTTGTGGTGGCTAAGTTCTTTGTGTACAA TAATGTTGTTGATTTGGAGAGTCGCAGGAATGGTGTTGTAGTACAGCATCAAGATGATGATGATGGTGGTGGGTTTCAGAAGCAATGA
AA sequence Show only first row Show all	>Lus10022891 pacid=23159988 polypeptide=Lus10022891 locus=Lus10022891.g ID=Lus10022891.BGIv1.0 annot-version=v1.0 MENLASQEKGDDAYTQDGTVSLRGSPVLRSKTGRWRACSFIVGYEVFERMAYYGIATNLVVYLGERLHEGTVQSSNNVTNWAGTVWILPILGAYVADAHL GRFWTFVVASSIYLSGMILLTLAVTITGLKPPTCPESDPGCDIQPSSLQKGIFYFALYIIAIGTGGTKPNISTMGADQFDEFEPKERTHKLSFFNWWMFS IFFGTLFSNTFLIYLQDHVGWTLGYGLPTAGLGFSIVVFLIGTPLYRHKLPAGSPFTKMAQVLVAAARKWNVELPDDPKQLYELGADQYDKLGKFTVDHT PSLRFLDKAAARRGKSSPWNLTPVTQVEETKQMLKMLPILAITIIPSAIVAQSGTMFIKQGATMDRSMGPNFEIPAACLAAFVTISMLISLVIYDRWFVP FIKHFTGNPRGITLLQRMGIGLILQITVMVSACLAERKRLETAIQHNKLQKLDRVPLTIFILMPQFALLGVADCFMEVAKLELFYDQAPDGMKSLGTSYF TSSIGLGQFLSSFLVRLVANLSARNGKGWILNNLNVSHLDYYYALLAGLALVNLIGFFVVAKFFVYNNVVDLESRRNGVVVQHQDDDDGGGFQKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022891 [exp]	0	1
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028881 [exp]	5.7	0.8798
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	6.5	0.8482
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10021152 [exp]	10.2	0.8284
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	12.5	0.8617
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	16.4	0.8529
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	17.0	0.8448
AT1G64680			unknown protein		Lus10001667 [exp]	17.8	0.8624
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	23.6	0.8483
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	24.4	0.8610
AT4G03410			Peroxisomal membrane 22 kDa (M...		Lus10018568 [exp]	26.1	0.8469

Compare expression of checked genes

Lus10022891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.