Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 687 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 664 / 0 Major facilitator superfamily protein (.1) AT2G40460 596 / 0 Major facilitator superfamily protein (.1) AT3G54140 519 / 2e-179 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 490 / 4e-168 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 473 / 3e-161 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 467 / 1e-158 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G53960 439 / 2e-147 Major facilitator superfamily protein (.1) AT2G02020 435 / 9e-147 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G37900 414 / 2e-138 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022891 [exp] 1043 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 960 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 796 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 795 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024933 [exp] 771 / 0 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 762 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 758 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 546 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 499 / 4e-171 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 823 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 797 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 770 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 766 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 595 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248600 [exp] 507 / 1e-174 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 505 / 7e-174 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 499 / 2e-171 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 499 / 2e-171 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 488 / 2e-167 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10022892 pacid=23159975 polypeptide=Lus10022892 locus=Lus10022892.g ID=Lus10022892.BGIv1.0 annot-version=v1.0 ATGGAGAATCTTGCTTCAGAAGAAAAGGGTGCCGATGTTTACACCCAGGACGGGACTGTCCGCCTCCGAGGCAGTCCCGCCCTTAGATCGAAAACCGGGA GATGGCAGGCTTGCTCTTTCATGGTTGGGTATGGATTTTTGGAGAGGATGGCTTATTATGGGATAGCAACAAACCTGGTGGTGTACGTGGGTGGAAGACT CCATGAAGGCACTGTTCAATCTGCAAACAACGTTACCAACTGGGCTGGTACTGTCTGGATTCTCCCTGTATTGGGAGCTTATGTCGCTGATGCTCACTTA GGCCGCTACTGGACCTTCGTCGTCTCAGCTTCCATCTACGTTTTCGGGATGATACTGCTAACCTTGGCGGTATCCATACCGGGTCTGAAGCCTCCAAAGT GCCCGGACAGCGATCCAGGGTGCGACATCCAGCCCTCTAGTCTGCAAAAGGGAATCTTCTATCTAGCACTCTACATAGTAGCAATCGGAATCGGTGGAAC CAAGCCGAACATCTCCACAATGGCGGCAGACCAGTTTGATGACTTTGAGCCCAAGGAAAGAGCTCACAAGCTCTCCTTCTTCAACTGGTGGATGTTCTGC CTCTTCTTTGGCACACTTTTCTCCAACACTTTCCTCATCTACCTCCAGGACAACGTTGGTTGGACGCTTGGTTATGGACTCCCCACTGTAGGACTTGTGA TCTCCATTGCTCTCTTCTTGACCGGGACTCCCTTGTACAGACACAAGCTCCCTCAAGGAAGTCCTTTTACTAAAATGGTTCAAGTGCTTGCTGCTGCTGC CGGGAAATGGAACGTTGAGCTGCCTGATGATCCCAAGGAGCTCTATGAACTTGGCGTTGATGAGTACAAGAAGTTGCGGAAGTTCACTGTTGATCACACC CCTTCCTTAAGGTTTCTAGACAAAGCAGCAACAAGAACAAAGACAACATCACCATGGCACCTAACACCAGTAACCCAAGTGGAAGAAACAAAGCAAATGT TAAAGATGCTCCCCATCCTAGCAATCACAATAATCCCAAGCGCCATCGTAGCCCAATCAACAACCCTATTCATCAAACAAGGAGCAACAATGGACAGAAG CATGGGACCCAATTTCGAAATCCCAGCAGCTTGCCTAGCGGCATTCATCACAATTTCAATGCTAATCAGCATAGTCATCTACGACCGCTGGTTCGTGCAA TTCGTCAAACAGTTTACGGGCAATCCCCGAGGGATCACGTTACTGCAAAGAATGGGGATCGGACTTATCCTCCAGATCATGGTCATGGTCTCTGCCTGCC TAGCCGAGCGAAAGAGGCTCGAAACCGCAAATCAACACAACAAACTACAGAAACTAGACCAGGTACCGCTCACCATTTTCATCCTGATGCCTCAATTTGC TCTGTTGGGGGTGGCGGATTGCTTCCTGGAAGTCGCGAAGCTGGAATTCTTCTACGATCAGGCTCCAGAAGGGATGAAATCTTTGGGGACTTCTTACTTC ACTAGCAGCATCGGATTGGGGCAGTTCCTGAGTAGCTTCTTGGTGAAGCTTGTGGCCAATGTGAGTGCGAAGAACGGCGGGAAAGGCTGGATATTGAACA ATTTGAATGTCTCACATTTGGATTACTACTATGGGTTGCTGGCGGTGATGGCTTCGGTAAACTTGATCGGGTTCTTTGTTTTGGCTAAGTTGTTTGTGTA TAACGTCGTTGATTTGGAGAGTCGGAACGGCGTCGTAAAGCATCATCAGGATGATGACAATGGCGGAGGCGATGCTGACGTGAATCACAAGTAA
AA sequence Show only first row Show all	>Lus10022892 pacid=23159975 polypeptide=Lus10022892 locus=Lus10022892.g ID=Lus10022892.BGIv1.0 annot-version=v1.0 MENLASEEKGADVYTQDGTVRLRGSPALRSKTGRWQACSFMVGYGFLERMAYYGIATNLVVYVGGRLHEGTVQSANNVTNWAGTVWILPVLGAYVADAHL GRYWTFVVSASIYVFGMILLTLAVSIPGLKPPKCPDSDPGCDIQPSSLQKGIFYLALYIVAIGIGGTKPNISTMAADQFDDFEPKERAHKLSFFNWWMFC LFFGTLFSNTFLIYLQDNVGWTLGYGLPTVGLVISIALFLTGTPLYRHKLPQGSPFTKMVQVLAAAAGKWNVELPDDPKELYELGVDEYKKLRKFTVDHT PSLRFLDKAATRTKTTSPWHLTPVTQVEETKQMLKMLPILAITIIPSAIVAQSTTLFIKQGATMDRSMGPNFEIPAACLAAFITISMLISIVIYDRWFVQ FVKQFTGNPRGITLLQRMGIGLILQIMVMVSACLAERKRLETANQHNKLQKLDQVPLTIFILMPQFALLGVADCFLEVAKLEFFYDQAPEGMKSLGTSYF TSSIGLGQFLSSFLVKLVANVSAKNGGKGWILNNLNVSHLDYYYGLLAVMASVNLIGFFVLAKLFVYNVVDLESRNGVVKHHQDDDNGGGDADVNHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022892 [exp]	0	1
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10027611 [exp]	2.4	0.9167
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10042561 [exp]	2.6	0.9412
AT5G44390			FAD-binding Berberine family p...		Lus10008410 [exp]	12.0	0.8837
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	15.2	0.8593
AT1G22430			GroES-like zinc-binding dehydr...		Lus10005656 [exp]	16.6	0.8926
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	26.5	0.8945
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	28.6	0.8985
					Lus10005655 [exp]	29.7	0.8738
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10015184 [exp]	30.3	0.8391
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	50.5	0.8733

Compare expression of checked genes

Lus10022892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.