Plant FIBer expression Database

Lus10022893 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024932
[exp]
377 / 1e-134 ND /
Lus10024931
[exp]
228 / 4e-75 ND /
Lus10022894
[exp]
211 / 1e-68 ND /
Lus10005395
[exp]
205 / 1e-66 ND /
Lus10005397
[exp]
203 / 6e-66 ND /
Lus10024084
[exp]
197 / 1e-63 ND /
Lus10041636
[exp]
196 / 4e-63 ND /
Lus10008233
[exp]
172 / 2e-51 ND /
Lus10005398
[exp]
152 / 2e-46 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10022893 pacid=23160059 polypeptide=Lus10022893 locus=Lus10022893.g ID=Lus10022893.BGIv1.0 annot-version=v1.0
ATGTCGACTACGACGGAAATCAAACGATTGCCTAGGTACGTGACGCTCCGGTCCAGATCGGTGAACAAGTACATGCACTACCTATGGAACGAAGAGGAGT
TCGGCGCGCAGTACCAAGCCATGGGGTGCAAGCGAGACATAGACCCCGTGAGTCCCTTCGTGAAAATCGAGGTCGTCCCCTCTGCAAACGACCCAGAACG
CCACGTGCACCTCCGGTGCTCTTACAACAACAAGTACCTCAAGCTGATGAAAAAGCACAGCGTGATGTGGGTCTCCGCCACGGGAGAAGAGCCCGTCGAA
GGGAAAGTGGTCCCGCCGCTGCAGCCACCTAACAATGTTGACCCGAATGGCGGCGGGCCCACCTCCACCCTGTTCGAGCCCGTGTTTCCTACCGACGAAC
CCGACAGTGTCGGGTTCATGCACGTTGAGACGGGCCTCCACATGCGTACATTCTCCAACCAGACGTTCAGCGCCGAGGTGAACGACGTCGTGTGCGTGTA
CACCCACGACGACGTGGGGACCATGCACCGGTTCGAGTACAGGCCGTGGGTGTCGTACGAGGAAGTGGTGAGGGCCCACAAGGAGGAGCTGAAGAGGCTG
AGGACCCATACGGAGTCCGCCTGGCAGGCCTATGAGGAGAAGGCCCAAGAAGAAGATGAGGAGATCTAG
AA sequence
>Lus10022893 pacid=23160059 polypeptide=Lus10022893 locus=Lus10022893.g ID=Lus10022893.BGIv1.0 annot-version=v1.0
MSTTTEIKRLPRYVTLRSRSVNKYMHYLWNEEEFGAQYQAMGCKRDIDPVSPFVKIEVVPSANDPERHVHLRCSYNNKYLKLMKKHSVMWVSATGEEPVE
GKVVPPLQPPNNVDPNGGGPTSTLFEPVFPTDEPDSVGFMHVETGLHMRTFSNQTFSAEVNDVVCVYTHDDVGTMHRFEYRPWVSYEEVVRAHKEELKRL
RTHTESAWQAYEEKAQEEDEEI

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10022893
[exp]
0 1
AT1G72490 unknown protein Lus10013160
[exp]
1.0 0.8650
AT3G05950 RmlC-like cupins superfamily p... Lus10035278
[exp]
1.4 0.8577
AT5G52790 CBS domain-containing protein ... Lus10027528
[exp]
3.3 0.7947
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Lus10033173
[exp]
5.7 0.7222
AT5G67360 ARA12 Subtilase family protein (.1) Lus10006693
[exp]
6.7 0.8222
AT5G07050 nodulin MtN21 /EamA-like trans... Lus10008706
[exp]
7.1 0.7973
AT5G18460 Protein of Unknown Function (D... Lus10006861
[exp]
7.7 0.8222
AT1G24020 MLP423 MLP-like protein 423 (.1.2) Lus10001037
[exp]
8.1 0.8147
AT5G12060 Plant self-incompatibility pro... Lus10023085
[exp]
8.7 0.8222
AT1G23540 IGI1, AtPERK12 proline-rich extensin-like rec... Lus10013014
[exp]
9.8 0.7748

Lus10022893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.