Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024931 [exp] 338 / 3e-118 ND / Lus10022893 [exp] 181 / 1e-56 ND / Lus10005395 [exp] 172 / 3e-53 ND / Lus10024084 [exp] 171 / 1e-52 ND / Lus10041636 [exp] 171 / 1e-52 ND / Lus10005397 [exp] 170 / 2e-52 ND / Lus10024932 [exp] 167 / 2e-51 ND / Lus10005398 [exp] 122 / 3e-34 ND / Lus10008233 [exp] 121 / 8e-32 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [flax] [poplar] Trefoil PF07468 [flax] [poplar] Agglutinin Agglutinin domain
Representative CDS sequence Show only first row Show all	>Lus10022894 pacid=23160008 polypeptide=Lus10022894 locus=Lus10022894.g ID=Lus10022894.BGIv1.0 annot-version=v1.0 ATGTCGAAATCTACCGTGGCAGGGCTGCCGAACTACATGGTTCTTCGATCCAAGGAGTTGGGCAAATGCATGCACTACCTATGGAACGAGGACGAGTTTG GGGAATACTACAAGGACATGGGGTGCAAGCGAGACATTGATCCGGTGAGTCCATTCTCGAAGCTACAAGTTGTACCGTCCACCATCGACCCGACCAGCAT GATCCACCTCCGTTGCTCCTACAACAACAAGTACTTGAAGCTCACCAAAAAGAACGGCGTGTTTTGGGTTTCCGCCACAGGGGATGAGCCCGTGGAGGAG GTGGAGGAATCCTCGTCCTTGGGCGGTGATGATCCCGACGACGATGACAAGAATGCTTCCACTTTGTTCGAGCCGACGTTCCCCGATGTCGACAAGCACG TGCAGACGGGCCTCTACATGTGGACATTCTACAACAAGGACTACGACGACGACATCAACCACGTGGTGTGCGTGTACAACAAGGACAACATACGGAAGTC GAACCTCTACGAGTTCGCCCCGTGGATGTCGTACGAGGAGACAATGAAGGCCCACAAGGAAGAGGTTCGAAGTTTGGAGGCTCATACGGTGTTGTCCTGG AAGTCATACGAGGCGGAGGCGAAGGCAGAGAAGGCGGAAATCGAGAAGGTGAAAGGGGAGATGAGGTGGGTTTGGGACGAGTATGTCAAAGTGAAGCGCA AGGCGAAGGAACAGGAGGTTCGGAAGCTGAAAGCCGGGAGTTTGTCGGCTTTGGGAGCCGGTGGTTAG
AA sequence Show only first row Show all	>Lus10022894 pacid=23160008 polypeptide=Lus10022894 locus=Lus10022894.g ID=Lus10022894.BGIv1.0 annot-version=v1.0 MSKSTVAGLPNYMVLRSKELGKCMHYLWNEDEFGEYYKDMGCKRDIDPVSPFSKLQVVPSTIDPTSMIHLRCSYNNKYLKLTKKNGVFWVSATGDEPVEE VEESSSLGGDDPDDDDKNASTLFEPTFPDVDKHVQTGLYMWTFYNKDYDDDINHVVCVYNKDNIRKSNLYEFAPWMSYEETMKAHKEEVRSLEAHTVLSW KSYEAEAKAEKAEIEKVKGEMRWVWDEYVKVKRKAKEQEVRKLKAGSLSALGAGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022894 [exp]	0	1
					Lus10001326 [exp]	3.7	1.0000
					Lus10026755 [exp]	5.5	1.0000
					Lus10016593 [exp]	6.6	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	6.7	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	8.7	1.0000
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10003277 [exp]	8.9	1.0000
AT3G13690			Protein kinase protein with ad...		Lus10020384 [exp]	9.9	1.0000
AT4G35220			Cyclase family protein (.1)		Lus10019823 [exp]	12.5	1.0000
					Lus10022172 [exp]	12.8	1.0000
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Lus10006093 [exp]	14.1	1.0000

Compare expression of checked genes

Lus10022894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.