Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04020 421 / 1e-137 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2) AT4G21070 313 / 2e-94 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT3G15120 60 / 5e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024930 [exp] 874 / 0 AT1G04020 201 / 3e-56 breast cancer associated RING 1 (.1.2) Lus10036151 [exp] 324 / 6e-99 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10017935 [exp] 84 / 2e-16 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013677 [exp] 83 / 5e-16 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001455 [exp] 49 / 1e-05 AT4G02110 372 / 1e-108 transcription coactivators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259000 [exp] 665 / 0 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.001G358100 [exp] 331 / 2e-100 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.011G141400 [exp] 80 / 4e-15 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G089400 [exp] 46 / 0.0001 AT1G77800 939 / 0.0 PHD finger family protein (.1.2) Potri.014G122400 [exp] 45 / 0.0002 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.005G171800 [exp] 44 / 0.0006 AT1G77800 522 / 2e-160 PHD finger family protein (.1.2) Potri.006G045100 [exp] 43 / 0.0006 AT2G41450 487 / 2e-167 N-acetyltransferases;N-acetyltransferases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10022895 pacid=23159933 polypeptide=Lus10022895 locus=Lus10022895.g ID=Lus10022895.BGIv1.0 annot-version=v1.0 ATGGCGTCCGAGAGTGTTAGGTCGATGAATCCAGGGGTCCTCCATCTTCAGAAGCTAGGCCTCGAGCTCAAATGTCCCCTCTGCTTGGATTTACTGAAGG AGCCACATTTGCTGTCTTGCGATCACATTTTCTGCAGGTCGTGTCTCCCTGGATCGACGCAGTTAGCTCTCCAGTGCCCTTTCTGCGAGTCTCCGTACAC TGATAAAGATGTTAGGAGTGTGCCTTTGATAGAGAACATTGTGAGTATCTATAAAGGATTGGATGCTGCCTTTTCAAAGACTGCGAGGCATTCTGCATCT GTTGCTTCTGGTCAAAATTCCCCAAGTGTGCGTAGTAAAGGTGAATCCGTCAAAACTAGCAGCTTCAGTGCAAGGCGTTGCTCATTTGCGACTGCTGATG AGAAGTTACCTTCAACTGGGAAAGTGGCTGACAACAAATATAGTTTGCCGAGGTGCTTGAATTATGATAACCAAGAAAATGTGGTGTATGTTGAAAATCA ACGCTGCAATGGCAAATCGAATGGGGAATCTCCACCGGTGAATTTGCAGGCAGGAGTGCAGTCTTTGGAGGAGGGGTATGGAGGAGGCTTCAATCAGGTT GATCAGTTGTCGCTTGATAGTCCATCATTTGGTGATGTCAAGGATTCTGAGAATGACAGCAATGATGATCATTGTGGCGATGATACGCCCCAAAATCGTG CTGTGGCAAAGGTGATTCGAAAGTCTGTTGACGGGAAGGGAATGCAAGAGCATGGCAATTCGGATTCTGGTACTCCTGAAGAGCACCTGAGGAATTCCAA GAGGCAAAAATTGAACTATAACTCATTAGAATCGACTATATCTAATCATGATCATTTTGAGCCAATGATATCTCAAACTGAAAATCTCGGAGTTACTGGT ATTCACAATCCTCTGTGGGCTAATCAGCTGTCCGCCACTGATAACGTTTGTGGGTTTTGTCACTCCTCTAAGGTCTCAGAGGATACTGGACCAATGATGC ATTATGTAAAGGGGAAGATGGTTGAGCAGCATGAAGCCAATGTGTCTGGTGCGGTGCATGTTCACAGAATGTGTATTAACTGGGCACCTGAGGTGTATTA TGAGGGCGATGTTGTCATGAATTTGAAGCAAGAGCTGGCTAGGGGTGCAAAACTGAAGTGTAGTCGATGCAGAAAAAAAGGTGCAGCACTAGGCTGTTAT GTAGAATCTTGCCGGAAAAGTTATCATGTTCTGTGTGCAATGGAAATCTCCAATTGTAGATGGGATTTGAAAAATTTCCTTGTACTTTGTCCAGCACATT CCTCTCACCAATTCCCAGATGAGAAGTTGAAGCGAGTGAAACAAAAGCCTAATCATGGCCGCAAGCCCATGGATGATCTCGAGTTGGCTCAAAGAGAGTT AAAACAGTCAACTATTTGGACAGATTCATCAAAGCGTTCAAAAGAATGGCTGTTCTGTGGATCTGCTCTCTCTATCGAGGAGAAGACTATTCTAGTGGAA TTCGGGAACTTGATTGGTGTACCAGTAACGAAATTCTGGAGACCAGATGTCACACATGTGATTGCATCCATAAATACGGAAGGGGCTTGCACTAGGACGC TGAAAGTTCTCATGGCAATCCTCAATGGCAAATGGGTCCTAACAATTGACTGGATCAAAGCATGTATCGATTTGAAGTCTCCGGTTAATGAAGAACCATA CGAAGTGAGACAAGACAATCATGGATCAACTGATGGCCCAAGATCCGGCAGACTTCGTGCCCTCAACAATAATCCAAAGCTGTTCCAACAATTCCACTTC TACCTTTCGGGCGACTTCATACCTGGGTACAAAAAGGATCTAGAGAACCTGATCGTTGCTGCAGGCGGCGCAATCTGGCAAAGCAAGGAAGAAATGTTGG AGAAGAATGGCGGCGCTGCAACGACGCTGGTTGTTTACAATCTTGATCCACCACAGGCGTGCAAGCTGGATGAAGAGGTTTCTCTTCTGTGGAGAAGACA TGATGAAGCTCAGGACATAGCTGCTAAGCTTGGATCCCAAGTAATTGGTCATACTTGGCTTCTGGAGTCTATTGCTTCTCATAAGTTGCAGCCCCTTGTT AGATAG
AA sequence Show only first row Show all	>Lus10022895 pacid=23159933 polypeptide=Lus10022895 locus=Lus10022895.g ID=Lus10022895.BGIv1.0 annot-version=v1.0 MASESVRSMNPGVLHLQKLGLELKCPLCLDLLKEPHLLSCDHIFCRSCLPGSTQLALQCPFCESPYTDKDVRSVPLIENIVSIYKGLDAAFSKTARHSAS VASGQNSPSVRSKGESVKTSSFSARRCSFATADEKLPSTGKVADNKYSLPRCLNYDNQENVVYVENQRCNGKSNGESPPVNLQAGVQSLEEGYGGGFNQV DQLSLDSPSFGDVKDSENDSNDDHCGDDTPQNRAVAKVIRKSVDGKGMQEHGNSDSGTPEEHLRNSKRQKLNYNSLESTISNHDHFEPMISQTENLGVTG IHNPLWANQLSATDNVCGFCHSSKVSEDTGPMMHYVKGKMVEQHEANVSGAVHVHRMCINWAPEVYYEGDVVMNLKQELARGAKLKCSRCRKKGAALGCY VESCRKSYHVLCAMEISNCRWDLKNFLVLCPAHSSHQFPDEKLKRVKQKPNHGRKPMDDLELAQRELKQSTIWTDSSKRSKEWLFCGSALSIEEKTILVE FGNLIGVPVTKFWRPDVTHVIASINTEGACTRTLKVLMAILNGKWVLTIDWIKACIDLKSPVNEEPYEVRQDNHGSTDGPRSGRLRALNNNPKLFQQFHF YLSGDFIPGYKKDLENLIVAAGGAIWQSKEEMLEKNGGAATTLVVYNLDPPQACKLDEEVSLLWRRHDEAQDIAAKLGSQVIGHTWLLESIASHKLQPLV R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	0	1
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	1.0	0.9750
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10007944 [exp]	1.4	0.9620
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	1.7	0.9611
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	2.2	0.9596
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	4.2	0.9525
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	5.5	0.9434
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	5.9	0.9168
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	6.6	0.9400
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	7.7	0.9607
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10001517 [exp]	7.7	0.9339

Compare expression of checked genes

Lus10022895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.