Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49830 213 / 4e-58 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 211 / 2e-57 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT1G10180 210 / 4e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024929 [exp] 1240 / 0 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10035756 [exp] 233 / 3e-65 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10034843 [exp] 229 / 2e-63 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 218 / 6e-60 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10018297 [exp] 210 / 4e-57 AT1G10180 858 / 0.0 unknown protein Lus10040609 [exp] 210 / 5e-57 AT1G10180 854 / 0.0 unknown protein Lus10024928 [exp] 178 / 9e-52 AT5G49830 54 / 3e-09 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 181 / 3e-47 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 164 / 1e-41 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195400 [exp] 763 / 0 AT1G10180 215 / 8e-59 unknown protein Potri.008G009100 [exp] 245 / 3e-69 AT5G49830 1070 / 0.0 exocyst complex component 84B (.1.2.3) Potri.010G249900 [exp] 238 / 6e-67 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.012G120000 [exp] 232 / 8e-65 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 229 / 1e-63 AT1G10180 788 / 0.0 unknown protein Potri.016G063700 [exp] 208 / 2e-56 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.015G119300 [exp] 181 / 3e-48 AT1G10180 628 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022896 pacid=23160018 polypeptide=Lus10022896 locus=Lus10022896.g ID=Lus10022896.BGIv1.0 annot-version=v1.0 ATGGAATCCTCCTCCACCACCTCCCTCGCCTCCAGGTTCCGGTTCAGGGACCATGCGCAGCAGTCAGAGAACGCCTCCGAATCCGATACCGACACCGATA TTTCTTCTGATTCCGTATTTAAGGATGACGAGGAAACGGAGCTCGACTCCATGACCGCCAAGGGAATCAAGCGGCTCTGTATGGAACTGCTGGAGATAAA GGCTGCATCTGATGAAGATTTTCATAAGAATAATGATGTTCTCATGTTGCTCTGCGGTGCGTTGGGTGGCAGAATTTTTGAAGATGTGAAGGACATTGAA AAAGAGTTGTCGCAACTGAAAAATCAAGTTTGGATGCAGAAGAATCTTGTTAACAACCTTATCAATGGCATATATCTGAAGACTTTGTCAGACCTAACTG TACCAGAAGAAGAAAATGAGTATGAGTATGAGGAACCGCCACAAGCAAATATGCTCGAGGATCATATAACTGAAGCTGCAGACAAGCTGGATGTGCTTCT GGCGGAGAACAGGGCTGATGAAGCCATCTCATGTCTTGAGAAGGAGGAAGAGAATTTGCACAAGTTGCAAATTGGTGGTGAAATATCAGCAGATTTATTA AAGTCATATTCTGCTGTTCTTTCTGAGAGAAGGGACATGCTTAAATTGCAATTGACTCTGCTGGCTGAAAATTCAAGAATAGCTGCTCCAGAACTCCAGA AGGCTCTCTCTGGGCTCTGCAAGCTGGGTGACAGCGGCCTGGCAACTCAGTTATTGCTCAAACATTACCATACTCGCATTGTGGCCGGAATAGATCAATT GGAGAATTCAGAGTCATTTTTACTTGATATGTACAGTAGAGACCTTTCCAAACTTGTTTTCTCCATGATATCCCAAGCGGCTAAGAGCTTCGTCATGCTG CATGGGGAGTCTGTAACCTATGCTACTGAACTGGTTCAGTGGGCTCGCGACGAAGTTCAAACTTTTGTTGGTTCGTTTAGTAAATATGCAAAATCGATCT CAGATGTCAGTTATGGACTGTCGTCAGCTGTAGAAGCTGTCCAATTCGCTCTGTCATATTGCTCACTCTTAGAGTCTCAGGGATTGACCTTGCAGCCTTA CTTGGTCAAGCTTATTCGACCCTGTGCAGAAGAAGTTCTAGAGGTGCACATAGACCATTTCAAGAAAGTGATTGGCATCTTTACAGCAACAGATTCTTGG GTTTTAAGTAGATATCTCATATCTGGAGTCATGACTGAAAGCTACTATTCTGCCGTATTTGGGCAAGAATCAGAATACTGTATACTCACAAATAGTGGGC GGAAGTTTGTAACTCTCTTGCAGGCAATGACCAGAGATGTTGTTCCTTTGGTAGCCCTCCGAATGCAAGGTTCAATTCTTAGAGGGTTGATGAACCTTTT CATGGAGTACATGTCTATCCTTGAAACAGCTATGACCCACGACATAGAGAGCCTGGAGAAAGGTGATTCAGAAATTATATGGGCTGATTCAGTACCACAA CAAGTTTCAATCCTGGCAAATCTGTCCACTCTTGAACATTTCTACTCTAGCACCATGTTAAGTATTTTTGGAGACATAAATCGTATCAATTCTGAGTCAA TGAGCAACCAGCCTATTGGGTTTCAACAGCAGCAGATTGAAGATTGTGTGCTTTTCATCCAAGAGGCATCTAGTAGACTGAGGGCTTGTTTCTGTGAACA ATATGTATACAAGCTAATGTCGCTTGAAACTGAGTGTAAATTGACCCTCGAAAAATACATTGCTAGCAAGGATGAATGTGGCTGGAGTCATGATATGATG CCCTCTCTTGCCTTTCAGGGTCTGTTTCTAGAGTTCCGAAAGTTAGAAAAGCTGGCTGAACACCAAATCTTTGAATCCAGTTGGTTGATGGAGTTAATAC GTGAGCTAATTGATGCCGTATTAGTCTGGATTTCAAAGAACAAAGAGTTCTGGGAATTGAATCAATATGACTCAACTCTTCCAAGTTCTCAAGATTCAAA GCAGTTTGTTCTTGATATGCATTTCCTGATGGAAATCACAAGGCATGGGGGATACTTATCCGAGAATCCTTCAGCACCTGTTGCTCTGTTAGAATCTGCT TTCGTCTCCGTTGGGCTTGATCCTGACAGAGAAGCAGCTGACGATGAATGGGCTGTCAATGCAGCAACCGAATCAATGAAATGGCTGCTGGAAATTGAGC AAGACTCAATGGCCTCCAATCAGGAAAATGATGGGACAACCACGGAAAGCCATCCCGAGCTAGCTAGTGGATCAACCCAAAACGATGAGTCAAGTTCCTC AGATGATTCTTCTCAAGTGGTCGCCACAGAAGGACCGAGACAGCTTCCGTTACCGGCCTCGGATCATTGGGCGCATTCAGAGCAGACTTCACAAGATGCA GGAGAAGAAGTGGGTTACCAGATTGAAGAAGCAGCATATGAGAAGTTTGAGCTGACCGAAGAAGAAGAAGAAGCATCGAGCTTTGAGCATGTAACAACGT TGTCTGCAGGTGCGACCACTGCTGATTCCCCCGAGATGATGATATTTCGGAACGAAGGACGGGGGCTGAGTCGACGTACTAGGGGCGGTAAAGGTTTCGG CAATGAGCTGGAGGGTGATGGTGTTGAAGCAGAGTCGCTGTGA
AA sequence Show only first row Show all	>Lus10022896 pacid=23160018 polypeptide=Lus10022896 locus=Lus10022896.g ID=Lus10022896.BGIv1.0 annot-version=v1.0 MESSSTTSLASRFRFRDHAQQSENASESDTDTDISSDSVFKDDEETELDSMTAKGIKRLCMELLEIKAASDEDFHKNNDVLMLLCGALGGRIFEDVKDIE KELSQLKNQVWMQKNLVNNLINGIYLKTLSDLTVPEEENEYEYEEPPQANMLEDHITEAADKLDVLLAENRADEAISCLEKEEENLHKLQIGGEISADLL KSYSAVLSERRDMLKLQLTLLAENSRIAAPELQKALSGLCKLGDSGLATQLLLKHYHTRIVAGIDQLENSESFLLDMYSRDLSKLVFSMISQAAKSFVML HGESVTYATELVQWARDEVQTFVGSFSKYAKSISDVSYGLSSAVEAVQFALSYCSLLESQGLTLQPYLVKLIRPCAEEVLEVHIDHFKKVIGIFTATDSW VLSRYLISGVMTESYYSAVFGQESEYCILTNSGRKFVTLLQAMTRDVVPLVALRMQGSILRGLMNLFMEYMSILETAMTHDIESLEKGDSEIIWADSVPQ QVSILANLSTLEHFYSSTMLSIFGDINRINSESMSNQPIGFQQQQIEDCVLFIQEASSRLRACFCEQYVYKLMSLETECKLTLEKYIASKDECGWSHDMM PSLAFQGLFLEFRKLEKLAEHQIFESSWLMELIRELIDAVLVWISKNKEFWELNQYDSTLPSSQDSKQFVLDMHFLMEITRHGGYLSENPSAPVALLESA FVSVGLDPDREAADDEWAVNAATESMKWLLEIEQDSMASNQENDGTTTESHPELASGSTQNDESSSSDDSSQVVATEGPRQLPLPASDHWAHSEQTSQDA GEEVGYQIEEAAYEKFELTEEEEEASSFEHVTTLSAGATTADSPEMMIFRNEGRGLSRRTRGGKGFGNELEGDGVEAESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10180			unknown protein		Lus10022896 [exp]	0	1
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10034628 [exp]	1.0	0.8819
AT4G18820			AAA-type ATPase family protein...		Lus10029265 [exp]	5.7	0.7985
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10025860 [exp]	22.0	0.8278
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	23.2	0.8154
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10033237 [exp]	29.3	0.8176
AT3G09720			P-loop containing nucleoside t...		Lus10026871 [exp]	34.9	0.7821
AT3G63240			DNAse I-like superfamily prote...		Lus10042619 [exp]	46.0	0.7388
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	46.2	0.8055
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10006182 [exp]	47.4	0.7482
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10019443 [exp]	54.2	0.7946

Compare expression of checked genes

Lus10022896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.