Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28600 685 / 0 NPGR2 no pollen germination related 2 (.1) AT2G43040 498 / 3e-167 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 444 / 3e-146 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024926 [exp] 1253 / 0 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 949 / 0 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 935 / 0 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 693 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 692 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10029803 [exp] 486 / 1e-162 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10020725 [exp] 483 / 4e-161 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 456 / 4e-151 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 453 / 7e-150 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259300 [exp] 828 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 717 / 0 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.008G169500 [exp] 703 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 526 / 4e-178 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G016000 [exp] 494 / 2e-165 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 481 / 2e-160 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022897 pacid=23159906 polypeptide=Lus10022897 locus=Lus10022897.g ID=Lus10022897.BGIv1.0 annot-version=v1.0 ATGGGTTTTCCTTGCGTCGGTGGTCAAGCGTTTTGGGACCTGAGCTATAGTGTTGAAAAGTATGGATATTGGCAGTTCATTTCATCCAAGAAACTAGTAG CTGGAGACGAAATGGTGGGCGAATGGGGTTCTCCTGCTACGCCGAGGTATCTCTCAGCGAGCAATCGATCATCCACGAGTAGTAAAAGCGAAGAGGAGGG AGTTCAGAAGCCTGATACCAGTAACATCGAAGAGGCCGAATTGTCTCTTCGAGAGCAAAGCTCGTTAAATAATGAGGAAGCTAGAGCATTGTTAGGGAGG ATGGAATATCAGAAAGGAAACTTTGTAGCCGCAATACATGTCTTCGAAGGTATAGATGTATCTGCAGCCACTCCAAAGATCACATCCAGTCTGGCTAGAC AAGGATATCAACAGAAAAGGACATCTAAGAACGACAGTGGCCACCAGCTCTCTATACATGCTGTCAGCTTGTTGTTGGAGTCAGTCTTTCTAAAGGCAAA ATCTTTGCAACATCTTGGGAGGTTTGCAGAAGCTGCTCAATCTTGCAAAGTAATAGTGGACATAGTTGAATCTTCTTTACCAGAAGGCTCGCCTGAAAAC TTTGCTCCTGACTGTAAATTGCAGGAGATTACGAGCAAGGCCGTCGAGTTGCTTCCCGAATTATTTAAACAGGCAGATATCTCGCACGAGGCCATGTCCT CGTACAGACGGGGTCTCCTCCATCACTGGAACCTCAATATCCAAACTACCGCAAGGATACGAAAGGAATTCGCAATCTTCCTTCTGTACAATGGCGGGGA GGCAGCGAGTCCTCCGAATCTACGTTCCCAGATGGACAGCTCGTTCGTTCCTCGAAATAACTTGGAAGAGGCCATACTGCTGTTGATGATACTGTTGAGA CAAATCTCACTCGAGAAGATCGAGTGGGATCCATCGATCTTGGATCATCTTTCGTTCGCTCTCTCGGTCTCTGGTGATCTAATCGTATTAGCCAGCTACA TCGAAGAATTAACTCCCGGGATAATTAGTAGAAGGCATGTGTATTATACTCTTGCTCTATGTTATTACACGGCAGGAGAGGAAACAGTAGCTTTGAATCT ACTCAAAAGGTTGTTACATAACAGCGAGGATCCGAATTATGTTAGCGGTTTACTACTGGCATCAAAGATTTGTTGTCGTGGAAACCCTCGACTTGCATTT GAAGGAATCGATTATGCTCGTCGAGCCCTAAAAAATATGGACAATGGATGTCATGAGTTAGAAAGTGCTGCCAATCTTCTCTTGGGGATTTCGTACTCTT CATGTGCAAGATCGGCTTTGGCAGACTCGGAAAGAGTCTCGAAACAGCGAGAATCGTTAAAGATTCTCGAAGCTGCCGCGAAGAGGACGAATATGGAACA TCCTGATATTCTGTACCATCTTAGCCTGGAGAATGCGGAGCAGAGGAAGTTGGATCCCGCGCTTGTTTATGCGAAGAAGGTTGTTAGGCGCGAAGCCGGT TCTAGTATCAAGGGGTGGTTGCTATTGGCGAGGATCGTTTCGGCTCAGAAGCGCTTCTTTGATGCCGAGAATGTCATCAATGCAGCGTTGGATCAGACTA GTAAATGGGATCAGGGAGTGCTTTTGCGAACCAAGGCTAAAATTCAGGTCGCGAGGCACGAAATGAAGAGTGCCGTTCAGACTTATACGCAGCTCCTTGC TATCCTTCAAGTTCAGAATCGGAGTTTCGCGTCTCATAAGAAGCTGCATAAGAATGATGGAATCAATGCTAGACAATTGGAATTGGAAGTTTGGCATGAT CTAGCCTCTCTATACATAAGCCTATCTCGGTGGCGAGATGCCGAGGTTTGCCTCTCGAAATCGAAAGCCATCCAGCCTTTTTCAGCTGAAAGATGCCATA TCATGGGCACCCTATATGAAAAGAAAGGGCTACTAGAGGAAGCATTGCCGGCTTTCATAACCGGGTTGAGCATTGACGCATGCCATGTTGCGAGCTTAGT ATCGACAGCAGTTGTTCTCAGGAAGATACGTACTGCATCGAATGAAACATTGAGAAGCTTTCTAATGGGTGCTCTACGGCTCGACAGAATGAATGCATCA GCTTGGTATAACCTTGGCTTGGTTCAGAAAGGTGAGGGTTCCGCTTCCTCGTTGACAGAAGCAGCCGAGTGCTTTGAAGCTGCCGCCTTTCTCGAAGAAA CGGAGCCAGTCGAGCCTTTCAGATGA
AA sequence Show only first row Show all	>Lus10022897 pacid=23159906 polypeptide=Lus10022897 locus=Lus10022897.g ID=Lus10022897.BGIv1.0 annot-version=v1.0 MGFPCVGGQAFWDLSYSVEKYGYWQFISSKKLVAGDEMVGEWGSPATPRYLSASNRSSTSSKSEEEGVQKPDTSNIEEAELSLREQSSLNNEEARALLGR MEYQKGNFVAAIHVFEGIDVSAATPKITSSLARQGYQQKRTSKNDSGHQLSIHAVSLLLESVFLKAKSLQHLGRFAEAAQSCKVIVDIVESSLPEGSPEN FAPDCKLQEITSKAVELLPELFKQADISHEAMSSYRRGLLHHWNLNIQTTARIRKEFAIFLLYNGGEAASPPNLRSQMDSSFVPRNNLEEAILLLMILLR QISLEKIEWDPSILDHLSFALSVSGDLIVLASYIEELTPGIISRRHVYYTLALCYYTAGEETVALNLLKRLLHNSEDPNYVSGLLLASKICCRGNPRLAF EGIDYARRALKNMDNGCHELESAANLLLGISYSSCARSALADSERVSKQRESLKILEAAAKRTNMEHPDILYHLSLENAEQRKLDPALVYAKKVVRREAG SSIKGWLLLARIVSAQKRFFDAENVINAALDQTSKWDQGVLLRTKAKIQVARHEMKSAVQTYTQLLAILQVQNRSFASHKKLHKNDGINARQLELEVWHD LASLYISLSRWRDAEVCLSKSKAIQPFSAERCHIMGTLYEKKGLLEEALPAFITGLSIDACHVASLVSTAVVLRKIRTASNETLRSFLMGALRLDRMNAS AWYNLGLVQKGEGSASSLTEAAECFEAAAFLEETEPVEPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28600		NPGR2	no pollen germination related ...		Lus10022897 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	5.6	0.8320
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	8.8	0.8282
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	9.9	0.8270
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10025698 [exp]	12.0	0.8112
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	12.8	0.8256
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	13.4	0.8194
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	15.9	0.8194
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	18.5	0.8090
AT5G51290			Diacylglycerol kinase family p...		Lus10016714 [exp]	18.6	0.8234
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	21.8	0.8060

Compare expression of checked genes

Lus10022897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.