Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25900 567 / 0 ATKO1, CYP701A3, GA3 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) AT2G45560 191 / 9e-55 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G37430 187 / 2e-53 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT1G74550 187 / 3e-53 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT2G40890 187 / 5e-53 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G07990 186 / 1e-52 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37400 179 / 2e-50 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT5G57220 179 / 3e-50 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT4G37330 178 / 6e-50 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT5G10600 177 / 2e-49 CYP81K2 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042640 [exp] 790 / 0 AT5G25900 582 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10011667 [exp] 776 / 0 AT5G25900 624 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032750 [exp] 773 / 0 AT5G25900 619 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032747 [exp] 724 / 0 AT5G25900 592 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042641 [exp] 712 / 0 AT5G25900 595 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10020847 [exp] 197 / 6e-57 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 196 / 1e-56 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10019457 [exp] 189 / 6e-54 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10020437 [exp] 188 / 1e-53 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129700 [exp] 637 / 0 AT5G25900 665 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Potri.006G033300 [exp] 194 / 8e-56 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.008G025500 [exp] 193 / 2e-55 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.016G031100 [exp] 193 / 3e-55 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.013G125300 [exp] 187 / 3e-53 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.016G031000 [exp] 186 / 7e-53 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.003G118200 [exp] 186 / 1e-52 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.009G069100 [exp] 184 / 3e-52 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G118500 [exp] 184 / 6e-52 AT4G12320 627 / 0.0 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) Potri.014G021700 [exp] 183 / 1e-51 AT5G10600 436 / 7e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10022898 pacid=23160016 polypeptide=Lus10022898 locus=Lus10022898.g ID=Lus10022898.BGIv1.0 annot-version=v1.0 ATGAAGCCTTCAACCATCACCGCCGTTCTGGTTGGATTCGTCTTGTCCGTGTATTTCATCAAGAAATTGGTCGTCCGTCACCGTCAGATGACAGCGAAAT CCAATCTCCGTTTAGTTCCCGCGGTGCCGGGGTTGCCGATAGTCGGAAACTTACTGCGGCTGAAGGAGAAGAAACCCCACAAGACTTTCGCCAAATGGGC AGAGACTTACGGTCCGATCTACTCCATCAGAACCGGTTCCAAGTATCAAGTCGTCATCAACTCCACCGACATTGCAAAAGAGGCCCTGGTGACCAAATAC TCATCAATAAGTACAAGGAAGCTACCAAAGGCTTTGGACATACTGTCTCAAAATAAATCCATAGTTTCTATGAGCGATTATGGTGACTTCTACAACATGA TCAAGCTCCACCTTCTGACTAGCGTTTCAAGCCCAACTGCTCAGAAAAAACATCGGTCCAACAAAGCCACAATGGTGGATAATATGGTAAGCCGTTTGCA AGCTCATGTTGAGGCTCATCCTGGACAAGCCGTCACTTTCAGGGAAATCTTTGAGTCTGAGCTCTTTGGTTTGACTATGAGACTAGTAATTGGGAAAGAA GTTGAGTCTATCTACGTCGAAGAATTGAGGACTAGAGTGTCTCGGGAAGAAATTTTCAAAATTTTCGTGATGGATCCATTAGACGGCCTCATGGAACTGG ACTGGAGAGAGTTCTTCCCATACTTGAATTGGATCCCTAATCGCGGTTTCGAAAAGAAGATCGAGAAAATGCATACTCGAAGGGATGCAGTGATGAGTGC CTTAATCAGGGAACAAAAACAAAGGATTGCTTCCGGCGAGGTGATTGATTGTTATCTCGACCATTTGTTGCTCGAAGCCAACACCTTGACAGATCTCCAA ATCAGGATGTTGATCTGGGAGATGTTTAATGCAGCATCTGATTCAACACTGGTGACTGTAGAGTGGGCTATGTACGAACTAGCTAAACATCCTGAAAAGC AAGAGAGGTTGTTTCGACAAATTCAAAACGAATGTGGGTCTAAAAATGTGTCGGAAGAACACGTGTCGAAACTTCCATACCTCACTGCTATTTTTCACGA GACACTTAGAAGGCACACCCCAGTCCCGCTCATCGCTTTGCGCCATGTGGATGAAGACACTGAATTAGGAGGGTACCATATTCCAGCTGGAACTGAGATA GCTATAAATTTGTATGGATGTAACATGGACGTTAAGCAATGGGAGAATCATGAAGAGTGGTTACCAGAAAGGTTTCTTAATGATGGATCTGAATCAGTAG AGCTGTACAAAACTATGGCATTTTCAAGAGGAAAGAGGGCTTGTACGGGAGCTCTCCAAGCAATGATGATTACTTGCACATCGATAGGGAGAATGGTGCA GGAATTCGAGTGGAGTTTTAAAGAAGGGGAAGAAGACCTTAATGAGGACACTGTGGCACTTACTAATCGAAAAGTTGTGCCGTTGCATGCAATCCTCAAA CCAAGATATTAG
AA sequence Show only first row Show all	>Lus10022898 pacid=23160016 polypeptide=Lus10022898 locus=Lus10022898.g ID=Lus10022898.BGIv1.0 annot-version=v1.0 MKPSTITAVLVGFVLSVYFIKKLVVRHRQMTAKSNLRLVPAVPGLPIVGNLLRLKEKKPHKTFAKWAETYGPIYSIRTGSKYQVVINSTDIAKEALVTKY SSISTRKLPKALDILSQNKSIVSMSDYGDFYNMIKLHLLTSVSSPTAQKKHRSNKATMVDNMVSRLQAHVEAHPGQAVTFREIFESELFGLTMRLVIGKE VESIYVEELRTRVSREEIFKIFVMDPLDGLMELDWREFFPYLNWIPNRGFEKKIEKMHTRRDAVMSALIREQKQRIASGEVIDCYLDHLLLEANTLTDLQ IRMLIWEMFNAASDSTLVTVEWAMYELAKHPEKQERLFRQIQNECGSKNVSEEHVSKLPYLTAIFHETLRRHTPVPLIALRHVDEDTELGGYHIPAGTEI AINLYGCNMDVKQWENHEEWLPERFLNDGSESVELYKTMAFSRGKRACTGALQAMMITCTSIGRMVQEFEWSFKEGEEDLNEDTVALTNRKVVPLHAILK PRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10022898 [exp]	0	1
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	7.7	0.9261
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	10.7	0.8691
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	11.0	0.9254
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10031960 [exp]	13.3	0.8653
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	13.4	0.9254
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013368 [exp]	15.5	0.9253
AT3G06240			F-box family protein (.1)		Lus10014937 [exp]	17.3	0.9253
AT4G30770			Putative membrane lipoprotein ...		Lus10015689 [exp]	19.0	0.9253
					Lus10011636 [exp]	20.5	0.9253
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	21.9	0.9253

Compare expression of checked genes

Lus10022898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.