Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28590 294 / 4e-98 MRL7 Mesophyll-cell RNAi Library line 7, unknown protein AT2G31840 118 / 2e-30 MRL7-L Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024925 [exp] 551 / 0 AT4G28590 336 / 1e-114 Mesophyll-cell RNAi Library line 7, unknown protein Lus10033475 [exp] 123 / 6e-33 AT2G31840 351 / 2e-122 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Lus10020901 [exp] 122 / 5e-32 AT2G31840 358 / 9e-124 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195600 [exp] 322 / 5e-109 AT4G28590 355 / 4e-122 Mesophyll-cell RNAi Library line 7, unknown protein Potri.007G145700 [exp] 100 / 7e-24 AT2G31840 301 / 8e-101 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022899 pacid=23160038 polypeptide=Lus10022899 locus=Lus10022899.g ID=Lus10022899.BGIv1.0 annot-version=v1.0 ATGCCATTTCTTCAGACCATTCATCTCCCAAATTCCCTATCTCCACTTCCCACCTGCAGAATCAATCCCACTTCGCTTCAACGTCTGTCAGCAGTTGCTC CAGCTCTTCCTTCATTATGCACTCCTCGTCGATGGAGATACTGCTCCTGCTCAGCTGCACGCGGGAGCTCCGACTCGGAGCCCAAGGGCAAGGCCAGCTC ACGAGCTCGCCGGCGGAAGCCCGAAGAAGAGGACGAAAGCGACGACGAGGATGAGATCTTCGTCCCGAGGAAGCCGAGGCGCGGCCGCCGCAGCGAAGCG GCGGCGGGCGAGGCCCTTGTGGGCCGGCACCTGAAGAAGAAGTTTCCGGTGAAGAAGACGTTCGCGTCGATTCGGCAGCAGGAGCAGGACCCGGAGGTGC TGGAGAAGATGAACAGCGTGATGAAGGAGAGGGTCGGCGAAGAAGAAACCCGAGATTCTCAACCATCTGACGACAAGGATGACGACGAAGAAGGAGAAGA CGAAGCGAGTCAGATGAAGAAGAGAGCAATGGTGGAGGAGGAGGCTACGCACTGGCCGCTGGATGCCGACATAGGGTGGGGGATCCGAGCGTCGGAGTAT TTCGAGCAGCATCCGATCAAGAACGTCGTAGGGGAAGATGGATTCGAGATTGATTGGGAGAAGGAGCTTGACGAAGGATGGGTACAGGAGATCAACTGTT TGGAATGGGAGAGCATCGCCTTTCATCCCAGTCCTTTGATCGTTCTGGTTTTCGAAAGATATAACAGGGCTACTGACAATTGGAAGACATTGAAAGAGCT GGAGAAGGCAGCCCAGGTTTATTGGAATGCCAAGGATCGATTGCCTCCTCGGACGGTGAAGATTGATTTGAACATTGAGAAGGATTTGGCGTATGCACTG AAAGCTAAAGAGTGTCCACAGTTTCTGTTTCTAAGAGGGAATAAGATGGTTTACAGAGAGAAAGAATTCCGGACATCGGAGGAATTGGTGCAGATGATTG CACATTTTTACTACGGCGCAAAGAGGCCCGCGTTCATCAATCAAGATGCTCGCCGTACTGTTTAA
AA sequence Show only first row Show all	>Lus10022899 pacid=23160038 polypeptide=Lus10022899 locus=Lus10022899.g ID=Lus10022899.BGIv1.0 annot-version=v1.0 MPFLQTIHLPNSLSPLPTCRINPTSLQRLSAVAPALPSLCTPRRWRYCSCSAARGSSDSEPKGKASSRARRRKPEEEDESDDEDEIFVPRKPRRGRRSEA AAGEALVGRHLKKKFPVKKTFASIRQQEQDPEVLEKMNSVMKERVGEEETRDSQPSDDKDDDEEGEDEASQMKKRAMVEEEATHWPLDADIGWGIRASEY FEQHPIKNVVGEDGFEIDWEKELDEGWVQEINCLEWESIAFHPSPLIVLVFERYNRATDNWKTLKELEKAAQVYWNAKDRLPPRTVKIDLNIEKDLAYAL KAKECPQFLFLRGNKMVYREKEFRTSEELVQMIAHFYYGAKRPAFINQDARRTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	0	1
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	1.7	0.9281
AT4G26370			antitermination NusB domain-co...		Lus10010325 [exp]	3.2	0.9380
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10029064 [exp]	3.5	0.9285
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	5.7	0.9118
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	7.0	0.9201
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	7.1	0.9149
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10042924 [exp]	8.7	0.9257
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	9.8	0.9235
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	12.2	0.9243
AT5G01590			unknown protein		Lus10012500 [exp]	12.3	0.9192

Compare expression of checked genes

Lus10022899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.