Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30820 139 / 3e-42 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024924 [exp] 317 / 4e-112 AT4G30820 143 / 2e-43 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103200 [exp] 180 / 5e-58 AT4G30820 179 / 7e-58 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3) Potri.006G180900 [exp] 171 / 2e-54 AT4G30820 171 / 1e-54 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06391 [flax] [poplar] MAT1 CDK-activating kinase assembly factor MAT1
Representative CDS sequence Show only first row Show all	>Lus10022901 pacid=23159919 polypeptide=Lus10022901 locus=Lus10022901.g ID=Lus10022901.BGIv1.0 annot-version=v1.0 ATGGGTGTTGGAAATAATAATCCTAAGGAGATTGCCATCAGAAGAAAGATTTCTAGCATATATAATAGGCGAGAAGAGGATTTCCCGTCATTCCTGGAGT ACAATAATTACTTGGAAAATGTGGAAGACATGATAATGAACTTAGTATCAGGAGTGGACACCCAAGCAATTGAAGCAGAAATTGCCGATTACCAGAAGCA AAATGCTGAACTGATCATGCTTAATCAAGCAAAGAGGGCTGAAGAATATGCTGCGGCTCTTGCTGCGAGTAAAGGCGTTCCCCAACAAACAGATACTGAT ATGAATTCTCATGCAGTGCTCGGGATAGAGACAGGAGGGCAGTATGCGCCCATAATGGCTACTGGGCAGCCGCGGCCAATGGGACCGCCGGGGTCTATTG GAGGCGAATTTGAAGGCTACGACGACGAAGAAATGATGAGGCTAAGAGCAGAAAAAGGGAGTAGAGCTGGCGGATGGACTTCAGAGCTTAGCAAGAAGAG GTCGCTTGAGGAAGCCTTCTCAACCGTTTGGATTTAG
AA sequence Show only first row Show all	>Lus10022901 pacid=23159919 polypeptide=Lus10022901 locus=Lus10022901.g ID=Lus10022901.BGIv1.0 annot-version=v1.0 MGVGNNNPKEIAIRRKISSIYNRREEDFPSFLEYNNYLENVEDMIMNLVSGVDTQAIEAEIADYQKQNAELIMLNQAKRAEEYAAALAASKGVPQQTDTD MNSHAVLGIETGGQYAPIMATGQPRPMGPPGSIGGEFEGYDDEEMMRLRAEKGSRAGGWTSELSKKRSLEEAFSTVWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30820			cyclin-dependent kinase-activa...		Lus10022901 [exp]	0	1
AT2G26470			unknown protein		Lus10038230 [exp]	6.2	0.7762
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	13.0	0.7553
AT3G24730			mRNA splicing factor, thioredo...		Lus10011878 [exp]	16.7	0.6601
					Lus10022880 [exp]	20.1	0.7406
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10039177 [exp]	20.3	0.7213
AT1G71150			unknown protein		Lus10021799 [exp]	23.0	0.6711
AT4G22380			Ribosomal protein L7Ae/L30e/S1...		Lus10025435 [exp]	24.0	0.7721
AT3G26350			unknown protein		Lus10011406 [exp]	24.7	0.7287
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Lus10034436 [exp]	27.0	0.6983
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	29.0	0.7242

Compare expression of checked genes

Lus10022901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.