Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28570 758 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 739 / 0 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT1G03990 677 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 481 / 4e-160 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024922 [exp] 1280 / 0 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 954 / 0 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 950 / 0 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10035673 [exp] 491 / 7e-164 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 474 / 5e-162 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10037257 [exp] 470 / 3e-156 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 132 / 1e-34 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011801 [exp] 0 / 1 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 792 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 778 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 478 / 1e-157 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 207 / 3e-58 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210325 [exp] 48 / 2e-05 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210150 [exp] 48 / 3e-05 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10022903 pacid=23159949 polypeptide=Lus10022903 locus=Lus10022903.g ID=Lus10022903.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAACAGAGTGCCATACCTTGTTGAGAGGAGGAAGAAGAAGCAATGGTGGTTCATACAGCCATGGTATGGGTTCTGGTCAGATCCAATCAC TTTCAGCCATCTGCGAAGCCCTCATTCCTCCATTGACGCTTCCAGAGAACACTACTACTGGAATGCCACTTGACACTCATCAGCATCAGCAAAAGAAAGA AGCACTTGTTTCCTTCTATGGAGCTTCTGGCTCTCAACCACCAATCCCTCATGAGGTGGCTGAAATAATGGTGAAGAGAGGCTTGTCAGAAGGAGTTCTG ATAGTGAAGCTGGTTCTAAAGATGCTATCTTTCAGACTGGGAACACTCTTGCTTTGTGGGTTTTGCAGCTTGGACTGGAAATGGCCATTCCTCCGCAACT TCTCCGAAATCTCCATTGATAAAAGGCAGCAGCTTTTAAGGAAATGGAGTGAAGAGAAGTTGATCATACCACTCAGAGTAGTTTTCGCCTTCATCAAGTT CTTCTGCTTGTTCATCTTCTTCTCTAGGGTTGATGAAGGTCTGAAGAATCCAGCATGGGAGGCAATTGGGTATGAAGTTGACAGTAGAGAGAGTCAACGC AAACAGAAAGGAGAGAGACCGTTACAAAAAGGGATTGTGGAGACAACAACTTACCAAGACAAGACCGAATTAGTGGAGTCTCTATCCGAAAAGGGAGTTC GGGTGACTGATCAACAAGATGACATACTTAAGATCGAATGTGATGCGGTAATTGTTGGCTCAGGTTGCGGAGGAGGGGTAGCAGCAGCAGTCCTTGCAAG ATCAGGACTAAAAGTGATCGTGCTCGAGAAAGGAAACTACTTCGCCCCGGAAGATTACTCCTCGCTCGAGGGACCTTCGTTGGCCGAATTATACGAACAC GGAGGAATGCTGGCCACTACCAACGGGAAGACCATAATATTAGCTGGTTCAACAGTTGGTGGAGGGTCAGCTGTGAACTGGTCTGCTTGCATCAAGACAC CTGATTCTGTCCTTAAGGATTGGTCTCAAAAGCTGCTGATTTTTGGAAGCTTGGAGTACAAGGAAGCCATGGATACTGTGTGGAAGAGGCTTGGCGTGAC TGAGGAGTGTAAACAAGAAGGGTTCCAGAACCAAGTCCTGAGGAAAGGGTGCGAGAAGCTCGGTCTGAAAGTAGACCCGGTTTCGAGAAACTCGTCCGAG GATCATTATTGTGGATCCTGCTGCTATGGATGCAAAACCGGAGACAAGAAGGGGACCGATACTACATGGCTTGTTGATGCCGTGGATAATGGTGGTTTGA TCGTAACGGGATGCAAGGCTGAACGATTCGTATTGCGAAATGACGAAAGTGGAAAAAGGAAGAGATGTTTGGGAGTGATTGCTAGATCTTCGAATCCGAA GCTTTTGAATAAGACACTAATGATTGAAGCTAAAGTAACAGTTTCAGCTTGTGGAGCTTTGTTAACTCCGCCTTTGATGATTTCGAGCGGGTTGAAGAAC CCTAACATCGGGAAGAATCTCCACCTCCATCCAGTCCTGATGGCATGGGGATACTTCCCGGAATCATCAGACCTGAAAGGAAAGGTTTACGAAGGAGGAA TCATCACTTCAATTCATAAAGTGGTTACAGAGGAATCATCCAAGAACACCATTGCCATTATAGAGACATCATCTCTAGGGCCGGCCTGTTACGCTGCAGT TTTCCCGTGGACATCGGGACTCGAGCTGAAAGAAAAGATGATCAAGTATCCAAGAACGGCAGTGCTTTTCGCACTGGTTAGGGACATTGGATCGGGGAAA GTGAAGGTAGAAGGGAGGGTATCTCACCGGCTGGATAAGGTGGACAAGGAGAATCTTCGGACCGGGCTGAGGCAGGCTTTGAGAATCTTGGTGGCGGCTG GAGCTGCTGAAGTTGGAACGCTTCGGAGCGATGGGCAGAGGTTTCGATGTGAAGGAACGAAGGAGAAGGACTTCGAGGCATTTATCGATGGAGTGGGGGT GAGCGGAGGGTTGAAGTCCGGTGGCAATCAATGGACTATGTTCTCATCAGCTCATCAGATGGGGAGCTGTAGGATGGGGCAAACGGAGGAGGACGGTGGA GTTGATGAGAATGGTGAGAGCTGGGAAGCTAAAGGTTTGTTTGTGTGCGATGCGAGCGTGCTTCCTAGTGCGGTTGGAGTCAATCCCATGATCACTATCC AATCAACTGCTTTATGCATTGCCAATAAGATAGCTGCATCATTCAAGAAATGA
AA sequence Show only first row Show all	>Lus10022903 pacid=23159949 polypeptide=Lus10022903 locus=Lus10022903.g ID=Lus10022903.BGIv1.0 annot-version=v1.0 MEEETECHTLLRGGRRSNGGSYSHGMGSGQIQSLSAICEALIPPLTLPENTTTGMPLDTHQHQQKKEALVSFYGASGSQPPIPHEVAEIMVKRGLSEGVL IVKLVLKMLSFRLGTLLLCGFCSLDWKWPFLRNFSEISIDKRQQLLRKWSEEKLIIPLRVVFAFIKFFCLFIFFSRVDEGLKNPAWEAIGYEVDSRESQR KQKGERPLQKGIVETTTYQDKTELVESLSEKGVRVTDQQDDILKIECDAVIVGSGCGGGVAAAVLARSGLKVIVLEKGNYFAPEDYSSLEGPSLAELYEH GGMLATTNGKTIILAGSTVGGGSAVNWSACIKTPDSVLKDWSQKLLIFGSLEYKEAMDTVWKRLGVTEECKQEGFQNQVLRKGCEKLGLKVDPVSRNSSE DHYCGSCCYGCKTGDKKGTDTTWLVDAVDNGGLIVTGCKAERFVLRNDESGKRKRCLGVIARSSNPKLLNKTLMIEAKVTVSACGALLTPPLMISSGLKN PNIGKNLHLHPVLMAWGYFPESSDLKGKVYEGGIITSIHKVVTEESSKNTIAIIETSSLGPACYAAVFPWTSGLELKEKMIKYPRTAVLFALVRDIGSGK VKVEGRVSHRLDKVDKENLRTGLRQALRILVAAGAAEVGTLRSDGQRFRCEGTKEKDFEAFIDGVGVSGGLKSGGNQWTMFSSAHQMGSCRMGQTEEDGG VDENGESWEAKGLFVCDASVLPSAVGVNPMITIQSTALCIANKIAASFKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10022903 [exp]	0	1
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	2.0	0.8857
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	3.0	0.9099
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	5.5	0.8720
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	6.3	0.8703
AT3G01570			Oleosin family protein (.1)		Lus10014559 [exp]	7.1	0.8570
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	7.5	0.8893
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	7.9	0.8648
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Lus10000692 [exp]	8.7	0.8492
AT3G55760			unknown protein		Lus10021897 [exp]	8.7	0.8818
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	8.8	0.8899

Compare expression of checked genes

Lus10022903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.