Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18520 559 / 0 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G61060 233 / 6e-68 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 227 / 1e-65 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT4G33470 149 / 3e-39 HDA14, ATHDA14 histone deacetylase 14 (.1) AT1G08460 126 / 1e-31 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G63110 101 / 1e-22 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 96 / 7e-21 HDA09, HDA9 histone deacetylase 9 (.1) AT4G38130 91 / 5e-19 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT4G09784 71 / 4e-15 unknown protein AT5G35600 58 / 7e-09 HDA7 histone deacetylase7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024919 [exp] 873 / 0 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10034689 [exp] 238 / 9e-70 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10017845 [exp] 226 / 5e-65 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10010889 [exp] 148 / 6e-39 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10013343 [exp] 143 / 2e-37 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10001850 [exp] 141 / 9e-37 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10043337 [exp] 109 / 1e-25 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10019486 [exp] 108 / 6e-25 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10012713 [exp] 107 / 8e-25 AT4G33470 508 / 2e-180 histone deacetylase 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G060400 [exp] 620 / 0 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.004G092900 [exp] 243 / 1e-71 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.005G064200 [exp] 150 / 1e-39 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.009G020500 [exp] 127 / 6e-32 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.015G082500 [exp] 104 / 1e-23 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 103 / 2e-23 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 98 / 9e-22 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G209800 [exp] 94 / 4e-20 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 93 / 9e-20 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.006G230300 [exp] 58 / 1e-08 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10022906 pacid=23160011 polypeptide=Lus10022906 locus=Lus10022906.g ID=Lus10022906.BGIv1.0 annot-version=v1.0 ATGAGGAGAGATTTGACGCTCCAAGACATGTGCAGCAACGTAGATTGGTTTGAGGATGAGGAAGACGAGGAAGACGATAGTGACTGGGAGCCGGTTGCAA AGCCTGTGATGGAAATGCTGAGCTGGTTCTGTGTCAACTGTACGATGATGAATCTTGATTGTGTTGTCCACTGTTCAAGTTGTCTTAGTCCATCATGCAA TCTGTTCCGTATGAGTAACTCACTATTGCTGTGCAAGTGGGTGTTTATATGTGTGATTTACCCGATCTATGCATTTCAGACATGTGGAGAGCATAAAGAT TCCGGTATCCTGAAGTATGGGTTTTACGCATCTCCTTCCGCCAGGGTTGACACTTCTGTGAACGGGCAGATAGAGAACAATGGCCACGAAATTAGCTCCG AACCATTTGCCTTAAGTGGTTCCACAGCAGTTGGTTTTGATGAGAGGATGTTGCTGCATGAAGAGGTTCAGATGAAGTCACATCCACATCCCGAAAGACC AGATCGTCTTCAAGCCATTGCTGCCAGTTTTGCAACCGCTGGTATATATCCTGGAAGATGTCAGGCTATTGCCCCAAGAGAGATTACTCCGGAAGAACTA AAAAGGGTGCACTCAATGGAGAACATTCAAACTGTAGACCTAACCAGCCATATCTACTCTAGTTATTTTACCCCTGACACTTATGCAAATGAGCATTCAG CTCGTGCTGCTAGACTTGCAGCAGGTTTGTGTGCTGATCTTGCTTCAGCAATTTTCTCTGGACGTGCAAAAAATGGTTTTGCTCTGATTAGGCCTCCTGG TCATCATGCTGGAGTGACGCAGGCCATGGGATTCTGCCTTCATAATAATGCAGCAGTTGCAGCATTGGCTGCACAGGTTGCTGGTGCCAAGAGAGTGTTA ATAGTTGACTGGGATGTTCACCATGGAAATGGCACGCAAGAAATTTTTGATGGTAACAAATCGGTTCTCTACATATCCTTGCATAGACATGACGGCGGAA AATTCTATCCCGGTACTGGATCTGCTAATGAGGTTGGTTCGAATGGTGCGGAGGGATATTGTGTAAACATTCCTTGGAGTTGCAGTGGAGTAGGGGATAA AGATTACATTTTTGCATTTCAGCATGTTGTGCTACCTATAGCCACTGAGTTTGATCCTGACTTCGCCATCATATCAGCTGGATTTGATGCAGCAAGGGGT GATCCACTGGGATGCTGTGATGTAACTCCTGTTGGATATGCACAAATGACGCAGATGTTGTCTAATCTCTCAGGAGGGAAGTTACTTGTCATTCTTGAGG GCGGCTACAATCTGCGCTCCATTTCGTCTTCTGCTACTGCAGTAGTCAAGGTATTGCTGGGTGAAAGTCCTTCTACTGAAGTAGAAGGAGAAATTGTTCC ATCCAGAGCTGGACTGCAAACTGTGGTTGAAGTTCTGAAGATTCAGAAGAGCTTCTGGTCATGTGCTGATTCAGGCTTGGAACAACTGCAACCGCAAGGT CCTGATGATATAAGTGAGATGATCTTTCCCTTTCTGTTTCCGATTCCTCTATTTAGTCGTCTGTCCATCCGTTATCCCGATCAACAAAAGCCATGTCTGT TTGTTGTAATTTCGTTCTTCTCTAATTGGACAGAGAAGAGAAGCAAAAAAAGGCGAAGAGCAGAGCCTCCGGTGTGGTGGAAATGGGGAAGAAAGCGGCT GCTATATAGTTTCATGACAACGAAGGTTCACCGTGCAGAACCAATGGAGGAGAGTGAACGGAAGTGGAAAGAGATGCTTGGTTTGTGA
AA sequence Show only first row Show all	>Lus10022906 pacid=23160011 polypeptide=Lus10022906 locus=Lus10022906.g ID=Lus10022906.BGIv1.0 annot-version=v1.0 MRRDLTLQDMCSNVDWFEDEEDEEDDSDWEPVAKPVMEMLSWFCVNCTMMNLDCVVHCSSCLSPSCNLFRMSNSLLLCKWVFICVIYPIYAFQTCGEHKD SGILKYGFYASPSARVDTSVNGQIENNGHEISSEPFALSGSTAVGFDERMLLHEEVQMKSHPHPERPDRLQAIAASFATAGIYPGRCQAIAPREITPEEL KRVHSMENIQTVDLTSHIYSSYFTPDTYANEHSARAARLAAGLCADLASAIFSGRAKNGFALIRPPGHHAGVTQAMGFCLHNNAAVAALAAQVAGAKRVL IVDWDVHHGNGTQEIFDGNKSVLYISLHRHDGGKFYPGTGSANEVGSNGAEGYCVNIPWSCSGVGDKDYIFAFQHVVLPIATEFDPDFAIISAGFDAARG DPLGCCDVTPVGYAQMTQMLSNLSGGKLLVILEGGYNLRSISSSATAVVKVLLGESPSTEVEGEIVPSRAGLQTVVEVLKIQKSFWSCADSGLEQLQPQG PDDISEMIFPFLFPIPLFSRLSIRYPDQQKPCLFVVISFFSNWTEKRSKKRRRAEPPVWWKWGRKRLLYSFMTTKVHRAEPMEESERKWKEMLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	0	1
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10024052 [exp]	2.0	0.9202
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	5.8	0.9023
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10039097 [exp]	7.5	0.8828
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	9.5	0.8679
AT3G51870			Mitochondrial substrate carrie...		Lus10004820 [exp]	9.9	0.8679
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	21.2	0.8332
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10039631 [exp]	21.7	0.8739
AT2G41950			unknown protein		Lus10016243 [exp]	24.8	0.8457
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	25.0	0.8604
AT3G23940			dehydratase family (.1.2)		Lus10034822 [exp]	25.8	0.8814

Compare expression of checked genes

Lus10022906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.