Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44090 709 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 697 / 0 Calcium-binding EF hand family protein (.1.2) AT5G28900 693 / 0 Calcium-binding EF-hand family protein (.1) AT5G28850 692 / 0 Calcium-binding EF-hand family protein (.1.2) AT1G54450 686 / 0 Calcium-binding EF-hand family protein (.1) AT5G18580 94 / 2e-20 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024917 [exp] 1037 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 876 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10003628 [exp] 872 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10021174 [exp] 715 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 708 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 700 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 696 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 683 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 672 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035800 [exp] 768 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 753 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.019G019500 [exp] 726 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 716 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.010G022300 [exp] 93 / 6e-20 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 90 / 6e-19 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022907 pacid=23160020 polypeptide=Lus10022907 locus=Lus10022907.g ID=Lus10022907.BGIv1.0 annot-version=v1.0 ATGGATATTGATACAGTAGGAGGAAGGGATGACGTCAGCATCTACTTAGACCCCGAACTGTTGCAACTTCCCGAGGTGTCTCCATTTGAGCTCAAGCCGA CTATTCAAATAGCTGAACAGCTGTTTTCTCAATGGCTCTCCCTCCCTGACACTAGCCGACTGGCTAAATTGCTGATTAAAGATGCAAAAGCTGGCCTGCC AATTAATCCGCATGGAATCTCTTCCACCGGAGGAAGCAATTCACTTATGAATGTCAATCCTCCTCCACTTTCGCCAAGGAGTTCATCTCCTCGCACTTCA AAGTATAGAGCAAGCCCTTTCTCTATTGCATCATCTCCAAAATTCGCAACTGAACCGGTCCAGGAGACTATACCTCAGTTCTACTACAAAAATGGTCGTC CACCCGCAAATGAACTGAAGGAACAGTGTCTTTCTAAGATTAACAAACTTTTCAACAGTAATCTTGACGGGCTGCATATAGATGAATTCAAATATGTTAC AAAGGAAGTTTGCAAGTTGCCGTCCTTCTTCTCCTCCGCCCTTTTCAGGCGGATTGATACAGAATGCTATGGGACAGTGACACGGGATGCATTTGTTAAA TATTGGGTAGAGAGTAACATGCTCACCATGGATATACCAACTCAAATCTTTGAAATTTTAAAGAATCCTGAACGTCGGTTCCTAACTAAGGCTGACTTCA AGCCAGTTCTTGAGGATCTGTTAGCCACCCACCCAGGGTTGGAATTTTTACAGAATGCACCTGAGTTTCAAGAGAAATATGCTGAAACTGTTATCTACAG AATATTTTACTACATCAATAAATCAGGAAATGGCCGTCTAACCCTCAGAGAGTTGAAGCACAGCAACCTAATCCGTGTCATGCAACAAGTTGATAAAGAA GAGGAAATTAACAAAATTCTAAGGTACTTCTCGTACGAGCATTTCTATGTGATATACTGCAAATTTTGGGAGCTGGATACAGATCATGATTACTTGCTCG ACCGAGAGGATCTCATCAAATATAGTAATCATTGCCTTACATACAGAATCGTTGATAGAATATTTTCACAGGTGCCGAGGAAGTTCACAAGCTACATGAA AGAAAAGATGAGCTATGAAGATTTTGTTTATTTCATACTGTCAGAAGAGGATAAATCTTCCGAACCTAGCCTTGAATATTGGTTCAAATGCATTGATTTG GACGGAAATGGCGCCCTAACATCCAGCGAATTGCAGTACTTTTACGAGGAGCAGCTACACCGAATGAGCTGTATGTCCCAGGAACCTGTACTATTTGAAG ATATATTATGTCAAATAGTCGACATGATTTCGCCTGAGAAGGACGGTTATATTACGTTGCGGGACTTGAAAAGGAGCAAACTTTCGGGCAACATGTTCAA TATTCTGTTCAACCTCAACAAGTTTGTGGCTTTCGAAAGCCGCAACCCGTTTCTCATCAACCAGGAACGTGGGGAACCGATTTTAACAGAGTGGGATCGT TTTGCACATAGAGAATATATCAGGCTTTCAATGGAGGATGCCACTGAAGTTGTTTCAAATGGGAATTTAGAAGCGTGGGAAGAAGTATCATCTCACGAGG CTCCATTCTAA
AA sequence Show only first row Show all	>Lus10022907 pacid=23160020 polypeptide=Lus10022907 locus=Lus10022907.g ID=Lus10022907.BGIv1.0 annot-version=v1.0 MDIDTVGGRDDVSIYLDPELLQLPEVSPFELKPTIQIAEQLFSQWLSLPDTSRLAKLLIKDAKAGLPINPHGISSTGGSNSLMNVNPPPLSPRSSSPRTS KYRASPFSIASSPKFATEPVQETIPQFYYKNGRPPANELKEQCLSKINKLFNSNLDGLHIDEFKYVTKEVCKLPSFFSSALFRRIDTECYGTVTRDAFVK YWVESNMLTMDIPTQIFEILKNPERRFLTKADFKPVLEDLLATHPGLEFLQNAPEFQEKYAETVIYRIFYYINKSGNGRLTLRELKHSNLIRVMQQVDKE EEINKILRYFSYEHFYVIYCKFWELDTDHDYLLDREDLIKYSNHCLTYRIVDRIFSQVPRKFTSYMKEKMSYEDFVYFILSEEDKSSEPSLEYWFKCIDL DGNGALTSSELQYFYEEQLHRMSCMSQEPVLFEDILCQIVDMISPEKDGYITLRDLKRSKLSGNMFNILFNLNKFVAFESRNPFLINQERGEPILTEWDR FAHREYIRLSMEDATEVVSNGNLEAWEEVSSHEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	0	1
AT5G26760			unknown protein		Lus10005906 [exp]	3.5	0.8821
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	4.5	0.8699
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	8.3	0.8623
AT1G79020			Enhancer of polycomb-like tran...		Lus10034778 [exp]	8.7	0.8565
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10017331 [exp]	11.8	0.8274
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10015887 [exp]	16.4	0.8419
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10024753 [exp]	16.9	0.7773
AT1G11060			WAPL (Wings apart-like protein...		Lus10001211 [exp]	17.0	0.8517
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	19.7	0.8241
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	20.4	0.8094

Compare expression of checked genes

Lus10022907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.