Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14340 580 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT4G28540 580 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT3G23340 575 / 0 CKL10 casein kinase I-like 10 (.1) AT1G03930 565 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G43320 544 / 0 CKL8 casein kinase I-like 8 (.1) AT5G44100 541 / 0 CKL7 casein kinase I-like 7 (.1) AT1G04440 535 / 0 CKL13 casein kinase like 13 (.1) AT4G26100 503 / 4e-177 CKL1, CK1 casein kinase 1 (.1) AT5G57015 499 / 2e-175 CKL12 casein kinase I-like 12 (.1) AT1G72710 495 / 2e-173 CKL2 casein kinase 1-like protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024916 [exp] 793 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10033913 [exp] 725 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10003539 [exp] 626 / 0 AT4G28540 555 / 0.0 casein kinase I-like 6 (.1) Lus10011812 [exp] 582 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10021175 [exp] 582 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10042570 [exp] 550 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 547 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 545 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 538 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036000 [exp] 671 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 670 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 596 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 594 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 553 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.003G043500 [exp] 508 / 1e-178 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 506 / 1e-177 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 502 / 3e-176 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 502 / 4e-176 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 456 / 1e-158 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022908 pacid=23159930 polypeptide=Lus10022908 locus=Lus10022908.g ID=Lus10022908.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGAAGGTTGACCATATCGTCGGTGGTATGACAATATCGTCGGTGGTAAGTTTAAGCTTGGGAGGAAGATTGGGAGTGGATCTTTTGGAGA GCTCTATCTGGACTGGAGAAGAAGTTGCTGTTAAGCTGGAATCTGTGAAGACCAAGCATCCTCAGCTTCAGTATGAGTCGAAGTTGTATATGCTTCTCCA AGGAGGGACTGGAATTCCTCATCTGAAGTGGTTTGGAGTTGAGGTGGAGTATAATATCATGGTTATTGATCTTCTTGGGCCGAGTTTGGAAGATCTATTC AACTACTGTAACAGGAAATTTACTTTGAAAACAGTGCTAATGCTTGCTGATCAACTGATTAACAGGGTTGAATATATGCATTCAAGAGGATTTCTTCACC GTGACATAAAGCCTGATAACTTCTTGATGGGCCTAGGTCGCAAAGCCAATCAGGTCTATGTAATTGATTATGGCCTTGCGAAGAAATACAGGGATCTCCA GACTCACAAGCACATTCCATACAGAGAGAATAAGAACCTCACAGGCACTGCACGTTATGCAAGTGTCAACACCCACCTCGGAGTTGAGCAAAGCAGAAGG GATGATTTGGAGTCACTTGGATATGTGCTTATGTATTTCCTCCGAGGAAGCCTCCCATGGCAAGGATTAAAGGCTGGCACAAAAAAGCAGAAATATGACA GGATCAGTGAAAAGAAAGTGCAGACTTCCATAGAGTCTCTTTGTAAATCTTATCCATCCGAGTTTGTATCCTACTTCCACTACTGTCGCTCATTGCGATT TGAAGATAAACCAGATTACTCGTATTTGAAGAGGCTTTTCCGCGACTTATTTATCCGGGAAGGTTATCAGTTCGACTATGTTTTCGACTGGACTGTACTG AAGTATCCTCAAGTTGGTTCCAGCTCTAGAGCACGAGTAAGTGTGAAACCAGGTCCTGCACTCGCGGCAGGACCATCAGCCGAAAGAGTGCCTGAGAGAG TTTCCGTTGGCAAAGAGATCCGGGAGAGATTCTCGGGCGCTGTTGAGGCTTTTTCGACCAGGAGAATCACTGGAGCTAGCCCGCTCGACAATTTGAGAGC CAGGACAAATGAGACTCAACAGCAGCAGCCCGAGGCAGAGAAAGGGCGCAGCACGTCTAGGCATGGAAGTAGCTCGAGACGAGCCATCGTTCCGAACGGG AAGCCAAGTTCCTCGGGTGATCACGGAGATGGTCGCCTGACGAGAACACACCATTCTTCTGGCCATATCTCTTCCACACAAAGAATCCTATCCGCGTACG AACCCATCAAATCATCAGGTGCTCGAGCAGCTGCTGCCAAATCCCGCGAGGAAAGTCTAAAGAGCTTCGAGTTTCTCACCCTGAACCGACGATGA
AA sequence Show only first row Show all	>Lus10022908 pacid=23159930 polypeptide=Lus10022908 locus=Lus10022908.g ID=Lus10022908.BGIv1.0 annot-version=v1.0 MEKMKVDHIVGGMTISSVVSLSLGGRLGVDLLESSIWTGEEVAVKLESVKTKHPQLQYESKLYMLLQGGTGIPHLKWFGVEVEYNIMVIDLLGPSLEDLF NYCNRKFTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRR DDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKVQTSIESLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVL KYPQVGSSSRARVSVKPGPALAAGPSAERVPERVSVGKEIRERFSGAVEAFSTRRITGASPLDNLRARTNETQQQQPEAEKGRSTSRHGSSSRRAIVPNG KPSSSGDHGDGRLTRTHHSSGHISSTQRILSAYEPIKSSGARAAAAKSREESLKSFEFLTLNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10022908 [exp]	0	1
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10043026 [exp]	10.7	0.9415
AT2G38410			ENTH/VHS/GAT family protein (....		Lus10025264 [exp]	10.8	0.9378
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Lus10009274 [exp]	12.2	0.9334
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	12.6	0.9404
					Lus10039819 [exp]	14.1	0.8986
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	14.7	0.9385
AT2G28080			UDP-Glycosyltransferase superf...		Lus10016126 [exp]	16.6	0.9071
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042259 [exp]	17.4	0.9352
AT1G04970			lipid-binding serum glycoprote...		Lus10033808 [exp]	18.3	0.9371
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	20.7	0.9273

Compare expression of checked genes

Lus10022908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.