Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03905 373 / 1e-130 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G44110 360 / 2e-125 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G02270 257 / 2e-84 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024914 [exp] 471 / 9e-169 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010838 [exp] 255 / 7e-83 AT5G02270 514 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10023792 [exp] 253 / 1e-82 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003971 [exp] 252 / 4e-78 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10030674 [exp] 44 / 0.0001 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10041690 [exp] 44 / 0.0001 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10024056 [exp] 44 / 0.0002 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10002094 [exp] 42 / 0.0002 AT4G33460 304 / 9e-105 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10000827 [exp] 42 / 0.0004 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036300 [exp] 395 / 4e-139 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G226600 [exp] 395 / 5e-139 AT1G03905 435 / 3e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G086000 [exp] 258 / 8e-85 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.003G155800 [exp] 248 / 6e-81 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.017G081100 [exp] 41 / 0.0009 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10022909 pacid=23159973 polypeptide=Lus10022909 locus=Lus10022909.g ID=Lus10022909.BGIv1.0 annot-version=v1.0 ATGGCGGAAAGTGCAGCTTCGTCGACTACACCGGCGGGCGGCGGAGGAAGAGACGGAGTCGGGAATGGTAGTATCAGCGTGTCGGCGATGCAATTCTCGT ACGACGGAAAACAGGCGCCTCTTTTCTTCGACTTCAGTCTCGACATTGCTCCTGGATCTCGATGCTTGCTCACCGGCGCCAATGGATCAGGGAAGTCGAC TTTACTGCGGATCGTGGCGGGGAAGCACATGGTGGGAGGGAAAGATGTCGTGAGAGTACTGAATAGCTCAGCTTTCCATGATACTCAGCTCGTTTGTAGC GGTGACTTGGCCTATTTGGGAGGTTCGTGGAGTAAAACCGTAGGATCAGCGGGAGAGATTCCGCTGCAGGGTGATTTCTCTGCTGAACATATGATATTTG GAGTTGAGGGAGTTGATCCAGCTAGAAGAGAGCAGCTAATTGAGCTACTTGATATCGATCTTCGATGGCGTATGCATAAGGTTTCTGATGGACAGCGGCG TCGTGTTCAAATCTGTATGGGTCTTCTTTATCCGTATAAGGTTCTGTTATTGGATGAGGTGACAGTTGATTTGGACGTTGTTGCGAGGATGGACTTGCTC GAGTTCTTTAGGGAAGAAACTGAGCAGAGGGGAGCGACATTAATCTACGCAACTCATATTTTCGACGGGCTAGAGGGATGGGCGACACACCTTGCTTACA TTCAAGATGGTGAACTTAACAGGTATTCAAAGCTATCCGAGCTGAACGAGTTGAAAAGCTCCGTAAACCTACTCACTGTCGTCGAGAACTGGCTACGTGC CGAAACCAAGCAGGAGAAAAAGAAGAAGAAGGAACCCATCAAAGCCCCTCCCGCCCAAACCCAGAAGCCCACCTCGGCTTCTCCGTTCATGTCGTCTAGT AGACACATGGCCTATTACCGTTGA
AA sequence Show only first row Show all	>Lus10022909 pacid=23159973 polypeptide=Lus10022909 locus=Lus10022909.g ID=Lus10022909.BGIv1.0 annot-version=v1.0 MAESAASSTTPAGGGGRDGVGNGSISVSAMQFSYDGKQAPLFFDFSLDIAPGSRCLLTGANGSGKSTLLRIVAGKHMVGGKDVVRVLNSSAFHDTQLVCS GDLAYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGVEGVDPARREQLIELLDIDLRWRMHKVSDGQRRRVQICMGLLYPYKVLLLDEVTVDLDVVARMDLL EFFREETEQRGATLIYATHIFDGLEGWATHLAYIQDGELNRYSKLSELNELKSSVNLLTVVENWLRAETKQEKKKKKEPIKAPPAQTQKPTSASPFMSSS RHMAYYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10022909 [exp]	0	1
AT5G05270			Chalcone-flavanone isomerase f...		Lus10030529 [exp]	1.0	0.8352
AT5G05270			Chalcone-flavanone isomerase f...		Lus10012878 [exp]	2.4	0.8064
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006621 [exp]	4.9	0.8309
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	9.6	0.8059
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020850 [exp]	13.0	0.7817
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	13.0	0.7673
AT2G36885			unknown protein		Lus10013829 [exp]	14.5	0.7843
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	17.3	0.8000
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	27.3	0.7430
AT3G53950			glyoxal oxidase-related protei...		Lus10024342 [exp]	30.9	0.7707

Compare expression of checked genes

Lus10022909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.