Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20490 108 / 4e-32 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024913 [exp] 134 / 2e-42 AT2G20490 106 / 1e-32 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2) Lus10033907 [exp] 134 / 2e-42 AT2G20490 107 / 9e-33 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G226300 [exp] 118 / 2e-36 AT2G20490 115 / 6e-36 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2) Potri.002G036500 [exp] 117 / 5e-36 AT2G20490 116 / 3e-36 EMBRYO SAC DEVELOPMENT ARREST 27, nucleolar RNA-binding Nop10p family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04135 [flax] [poplar] Nop10p Nucleolar RNA-binding protein, Nop10p family
Representative CDS sequence Show only first row Show all	>Lus10022910 pacid=23159945 polypeptide=Lus10022910 locus=Lus10022910.g ID=Lus10022910.BGIv1.0 annot-version=v1.0 ATGCGACTTGGACGCACCGTTTCGCTCCACGTCTCTCCCATTAATCTCACCGCGCAAAGGGTAGAAAGGGGAAATAGAGTACTAAAGCCAGCGGGGTTGG TGGTTCCTGGTCGACTTTGGATGGCAATTATAACCGAGATGTATCTATGGACTGTTCCTCAAGGATTTACGATGTTGCTGCAGTACTACATCAATGATAA CGGCGACAAAGTCTACACCACCAAGAAGGAATCGCCGGTTGGGTTAGCTACGCAGTCTGCTCATCCTGCTCGCTTCTCTCCCGATGACAAATACGCAAGG CAAAGGTATCTATTGAAGAAGCGATTCGGGTTGCTGCCTACTCAACAACCTCCTCAGAAGTACTGA
AA sequence Show only first row Show all	>Lus10022910 pacid=23159945 polypeptide=Lus10022910 locus=Lus10022910.g ID=Lus10022910.BGIv1.0 annot-version=v1.0 MRLGRTVSLHVSPINLTAQRVERGNRVLKPAGLVVPGRLWMAIITEMYLWTVPQGFTMLLQYYINDNGDKVYTTKKESPVGLATQSAHPARFSPDDKYAR QRYLLKKRFGLLPTQQPPQKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	0	1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	2.4	0.8784
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10022296 [exp]	8.4	0.8799
AT1G07070			Ribosomal protein L35Ae family...		Lus10021121 [exp]	13.1	0.8517
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	14.9	0.8750
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	16.1	0.8351
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	19.5	0.8673
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10031568 [exp]	19.5	0.8222
AT5G19300			unknown protein		Lus10034063 [exp]	19.7	0.8747
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10038905 [exp]	22.7	0.7662
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	26.5	0.8410

Compare expression of checked genes

Lus10022910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.